View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_71 (Length: 211)
Name: NF3879_low_71
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_71 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 4e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 11 - 194
Target Start/End: Original strand, 6505179 - 6505363
Alignment:
| Q |
11 |
gcagagactaattcctaagagttttaatgttggtgcatgttcaaggtttgatttgaatccagtaccttagttaagataaaagaaattcatatcatatcat |
110 |
Q |
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| T |
6505179 |
gcagagactaattcctaaaaattttaatgttggtgcatgttcaaggtttgatttgaatccagtgccttagttaaactaaaagaaattcatatcatatcat |
6505278 |
T |
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| Q |
111 |
ttaagcattattgggtaaacaaatt-aaacgtttacaacaggaagcaattttcttagtcattgaatatgcataataggacatatt |
194 |
Q |
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|||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6505279 |
ctaagcattattgggtaaacaaattaaaacgtttatcataggaagcaattttcttagtcattgaatatgcataataggacatatt |
6505363 |
T |
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