View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3879_low_72 (Length: 206)

Name: NF3879_low_72
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3879_low_72
NF3879_low_72
[»] chr7 (4 HSPs)
chr7 (14-190)||(36943313-36943490)
chr7 (143-180)||(34235587-34235624)
chr7 (145-181)||(17749724-17749760)
chr7 (145-181)||(24539237-24539273)
[»] chr8 (3 HSPs)
chr8 (143-184)||(6387588-6387629)
chr8 (158-189)||(32587535-32587566)
chr8 (142-181)||(39455658-39455697)
[»] chr1 (3 HSPs)
chr1 (145-181)||(13114784-13114820)
chr1 (145-181)||(50424980-50425016)
chr1 (145-181)||(50773225-50773261)
[»] scaffold0095 (1 HSPs)
scaffold0095 (142-181)||(14043-14082)
[»] chr4 (2 HSPs)
chr4 (142-185)||(40662036-40662079)
chr4 (143-181)||(20454570-20454608)
[»] chr5 (1 HSPs)
chr5 (142-180)||(16875376-16875414)
[»] chr3 (7 HSPs)
chr3 (143-185)||(37926557-37926599)
chr3 (143-181)||(41707551-41707589)
chr3 (144-181)||(27243075-27243112)
chr3 (141-178)||(33164940-33164977)
chr3 (144-181)||(50661635-50661672)
chr3 (161-189)||(41170803-41170831)
chr3 (143-187)||(46450089-46450133)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 36943313 - 36943490
Alignment:
Q  14 agcagagagcataaatactttaaagtaaagttggaaaacaaagacgatcttatcttaaannnnnnnnnnnnnnnnnnaatgagaatcatgtacatatttt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  36943313 agcagagagcataaatactttaaagtaaagttggaaaacaaagacgatcttatcttaaattttttatttatttttttaatgagaatcatgtacatatttt 36943412  T
Q  114 -ttaacagtttctctaacattcattctttcacattgattttatctaataagagagtgagtgttagagagtgttcatat 190  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36943413 tttaacagtttctctaacattcattctttcacattgattttatctaataagagagtgagtgttagagagtgttcatat 36943490  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 34235624 - 34235587
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagaga 180  Q
    |||||||||||||||||||||| |||||||||||||||    
T  34235624 acattgattttatctaataagaaagtgagtgttagaga 34235587  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Complemental strand, 17749760 - 17749724
Alignment:
Q  145 attgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  17749760 attgattttatccaataaaagagtgagtgttagagag 17749724  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 24539237 - 24539273
Alignment:
Q  145 attgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  24539237 attgattttatccaataaaagagtgagtgttagagag 24539273  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 184
Target Start/End: Complemental strand, 6387629 - 6387588
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagagagtgt 184  Q
    |||||||||||||| ||||| |||||||||||||||||||||    
T  6387629 acattgattttatccaataaaagagtgagtgttagagagtgt 6387588  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 189
Target Start/End: Complemental strand, 32587566 - 32587535
Alignment:
Q  158 aataagagagtgagtgttagagagtgttcata 189  Q
    ||||||||||||||||||||||||||||||||    
T  32587566 aataagagagtgagtgttagagagtgttcata 32587535  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Original strand, 39455658 - 39455697
Alignment:
Q  142 cacattgattttatctaataagagagtgagtgttagagag 181  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  39455658 cacattgattttacctaataagagagtgggtgttagagag 39455697  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 13114784 - 13114820
Alignment:
Q  145 attgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13114784 attgattttatctaataaaagagtgagtgttagagag 13114820  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 50424980 - 50425016
Alignment:
Q  145 attgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  50424980 attgattttatccaataaaagagtgagtgttagagag 50425016  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 181
Target Start/End: Original strand, 50773225 - 50773261
Alignment:
Q  145 attgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  50773225 attgattttatccaataaaagagtgagtgttagagag 50773261  T

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Target: scaffold0095 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 181
Target Start/End: Complemental strand, 14082 - 14043
Alignment:
Q  142 cacattgattttatctaataagagagtgagtgttagagag 181  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  14082 cacattgattttacctaataagagagtgggtgttagagag 14043  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 40662036 - 40662079
Alignment:
Q  142 cacattgattttatctaataagagagtgagtgttagagagtgtt 185  Q
    |||||| |||||||| ||||||||||||| ||||||||||||||    
T  40662036 cacattaattttatccaataagagagtgaatgttagagagtgtt 40662079  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Complemental strand, 20454608 - 20454570
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||||||||||| |||||||||| |||||||    
T  20454608 acattgattttatctaataaaagagtgagtgctagagag 20454570  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 180
Target Start/End: Original strand, 16875376 - 16875414
Alignment:
Q  142 cacattgattttatctaataagagagtgagtgttagaga 180  Q
    ||||||||||||| | |||||||||||||||||||||||    
T  16875376 cacattgattttacccaataagagagtgagtgttagaga 16875414  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 185
Target Start/End: Complemental strand, 37926599 - 37926557
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagagagtgtt 185  Q
    |||||||||| | ||||||||| ||||||||||||||||||||    
T  37926599 acattgatttcacctaataagaaagtgagtgttagagagtgtt 37926557  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 181
Target Start/End: Original strand, 41707551 - 41707589
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagagag 181  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  41707551 acattgattttatccaatgagagagtgagtgttagagag 41707589  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Complemental strand, 27243112 - 27243075
Alignment:
Q  144 cattgattttatctaataagagagtgagtgttagagag 181  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  27243112 cattgattttatccaataaaagagtgagtgttagagag 27243075  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 141 - 178
Target Start/End: Original strand, 33164940 - 33164977
Alignment:
Q  141 tcacattgattttatctaataagagagtgagtgttaga 178  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  33164940 tcacattgatttaatccaataagagagtgagtgttaga 33164977  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 50661635 - 50661672
Alignment:
Q  144 cattgattttatctaataagagagtgagtgttagagag 181  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  50661635 cattgattttatctaataaaagagtaagtgttagagag 50661672  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 41170803 - 41170831
Alignment:
Q  161 aagagagtgagtgttagagagtgttcata 189  Q
    |||||||||||||||||||||||||||||    
T  41170803 aagagagtgagtgttagagagtgttcata 41170831  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 187
Target Start/End: Complemental strand, 46450133 - 46450089
Alignment:
Q  143 acattgattttatctaataagagagtgagtgttagagagtgttca 187  Q
    |||||||||  ||||||||| |||||||||| |||||||||||||    
T  46450133 acattgattccatctaataaaagagtgagtgctagagagtgttca 46450089  T

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