View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_8 (Length: 520)
Name: NF3879_low_8
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 175 - 505
Target Start/End: Original strand, 28664473 - 28664809
Alignment:
| Q |
175 |
tttggtgactgcatgaacaacatttttacttctttttccaattttagagtaagttgtgttagacatcaagtgaataatgtgactcgtttccttggaaagg |
274 |
Q |
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| T |
28664473 |
tttggtgactgcatgatcaacatttttacttctttttccaattttagagtaagttgtgttagacatcaagtgaataatgtgactcgtttccttggaaagg |
28664572 |
T |
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| Q |
275 |
aagtactatcaatagttaatttgtcc-gagtttattttgtcattttccactttgtattgaaattttgattatcaatgtaat-gattgaattcgtttggtt |
372 |
Q |
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| T |
28664573 |
aagtactatcaatagttaatttgtcctgagtttattttgtcattttccactttgtattgaaattttaattattaatgtaatggattgaattcgtttggtt |
28664672 |
T |
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| Q |
373 |
aaagaaaattagtaatgtgcaagatccaatctaaaccagac----ttaatttggaacatatcataattttctcaaaaataaatccaaaccaaacttaagt |
468 |
Q |
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| T |
28664673 |
aaagaaaattagtaatgtgcaagatccaatctaaaccagacttaattaatttggaacatatcataattttctcaaaaataaatccaaaccaaacttaagt |
28664772 |
T |
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| Q |
469 |
gtgtgatcgagagattattgtttagtgcagaaaatag |
505 |
Q |
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| T |
28664773 |
gtgtgatcgagagattattgtttagtgcagaaaatag |
28664809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 14 - 115
Target Start/End: Original strand, 28664312 - 28664413
Alignment:
| Q |
14 |
agatatgttacttgatcagccgacaaaggtaatagaaaataattcacctttgaagtttgtgagtgtattatcaagttgtatcatgcatgatgattgactt |
113 |
Q |
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| T |
28664312 |
agatattttacttgatcagccgacaaaggcaatagaaaataattcacctttgaagtttgtgagtgtattatcaagttgtatcatgcatgatgattgactt |
28664411 |
T |
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| Q |
114 |
gc |
115 |
Q |
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| T |
28664412 |
gc |
28664413 |
T |
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