View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3879_low_9 (Length: 515)
Name: NF3879_low_9
Description: NF3879
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3879_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 106 - 499
Target Start/End: Original strand, 39032087 - 39032487
Alignment:
| Q |
106 |
ataagatctctgtaaacacaaatattgagctattttacgaactaaacacttacatattttgtaccttaattccacagtctgctttgaaaagaagaaacat |
205 |
Q |
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| T |
39032087 |
ataagatttctgtaaacacaaatattgagctattttacgaactaaacacttacatattttgtaccttaattccacagtccgctttgaaaaggagaaacat |
39032186 |
T |
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| Q |
206 |
cttattcactttatattgaacactttgccgtcataaaaagtcttgctctctttcact----agaaaagtattgttctattggcgaagaaaactaacctag |
301 |
Q |
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| T |
39032187 |
cttattcactttatattgaacactttgccgtcataaaaagtcttgctgtctttcactaaaaagaaaagtattgttctatttgcgaagaaaactaacctag |
39032286 |
T |
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| Q |
302 |
ttatttttttcgtgtaaaataagctaaaatatataattag---nnnnnnnnnnnngaaggaataattagttcttatttcattatatatcttcctattaca |
398 |
Q |
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| T |
39032287 |
ttatttttttcgtgtaaaataagctaaaatatataattagtttttttttttttttgaaggaataattagttcttatttcattatatatcttcctattaca |
39032386 |
T |
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| Q |
399 |
ctgttttgctctgtgtgattatatttaaataggggtgcgcatgagccaactcaacctgaagacccgtcccaactcaatagtttcgggtatggtgcatgtt |
498 |
Q |
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| T |
39032387 |
ctgttttgctttgtgtgattatattcaaataggggtgcgcatgagccaactcaacatgaagacccgtcccaactcaatagtttcgggtatggtgcatgtt |
39032486 |
T |
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| Q |
499 |
c |
499 |
Q |
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| T |
39032487 |
c |
39032487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 39030166 - 39030266
Alignment:
| Q |
1 |
agataatgtttatgtgacaaaccttcaatttaactacaaattaggcttctttaattttcttggatttgcaaacaaaagaacaaatgtcgtctaaaattca |
100 |
Q |
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| T |
39030166 |
agataatgtttatgtgacaaaccttcaatttaactacaaattaggcttcttt-----ttttggatttgcaaacgaaagaacaaatgtcgtctaaaattca |
39030260 |
T |
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| Q |
101 |
cacaca |
106 |
Q |
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| T |
39030261 |
cacaca |
39030266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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