View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3880_high_1 (Length: 676)
Name: NF3880_high_1
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 547; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 11 - 657
Target Start/End: Original strand, 3498271 - 3498917
Alignment:
| Q |
11 |
cacagaaccaccacgcattggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaaaaatttgaa |
110 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
3498271 |
cacagaaccaccacgcgttggatcaaaggctacccctgctacaccacaacactgggtagagggtgcagcttcagaactcacatatgctgaaaaatttgaa |
3498370 |
T |
|
| Q |
111 |
actgttgagcagtgaagtggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498371 |
actgttgagcagtgaagtggtatagattgatcttgccaactgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctg |
3498470 |
T |
|
| Q |
211 |
aagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacacc |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
3498471 |
aagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggcaaaaccacccatactataacggtagctggactaaaagctagcacacc |
3498570 |
T |
|
| Q |
311 |
ggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498571 |
ggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttg |
3498670 |
T |
|
| Q |
411 |
ggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctag |
510 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3498671 |
ggcggtgttgcattctgagtaggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctag |
3498770 |
T |
|
| Q |
511 |
ctgaaatcaaaacaactataagtgttagacacacaagcatcttacaatttaattagnnnnnnnnnnnnnnnnnnnncaatcagatattaaagacaaatag |
610 |
Q |
| |
|
||||||||||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
3498771 |
ctgaaatcaaaacaactataagtgtcaaacacacaagcatcttacaatttaattagaaaaggaaaaacacaaaaaacaatcagatattaaagacaaagag |
3498870 |
T |
|
| Q |
611 |
tggataacataattctaatttaaagttcagtcataaatgtcacaacc |
657 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
3498871 |
tggataacataattctaatttaaagttcagtcataaatgtcgcaacc |
3498917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 167 - 563
Target Start/End: Original strand, 3510582 - 3510977
Alignment:
| Q |
167 |
taaaggggcaaaaccaatccagttgggtgggctaagaggtg---ctgaagttgtaatacttgtcttgggagaaaattccagaccatttccctgtccaggc |
263 |
Q |
| |
|
|||||| ||||||||| |||||||||||| ||||||||||| | | | | |||||| ||||||||||||||| |||| |||||| | |||||| |
|
|
| T |
3510582 |
taaaggtgcaaaaccactccagttgggtgcgctaagaggtggcacgccattattgatacttttcttgggagaaaattggagactatttccacgaccaggc |
3510681 |
T |
|
| Q |
264 |
aaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatcagcagctataatcc |
363 |
Q |
| |
|
| |||| ||||||| |||| || ||||||||||| |||| ||||||||||||| | || |||| |||||||||||||||||||| | | |||||| | |
|
|
| T |
3510682 |
ataacctcccatacaataatggcagctggattaacagctggcacaccggccacaagcaaggtaccgttgtctgtgatgatagcatcaccggttataattc |
3510781 |
T |
|
| Q |
364 |
cacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaatgaagttgaacctt |
463 |
Q |
| |
|
|||||||||| ||| | | |||||||||||||||||||||||||||| || |||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
3510782 |
cacttggcccgcatgccaatagccctttactagtgcaaaaccatttgtgcagtgttgcattctgagtaggaggccattgggaccaatgaagttgaaccga |
3510881 |
T |
|
| Q |
464 |
tcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaagcatcttacaatttaat |
563 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
3510882 |
tcctgattgtaatacagaacagacac--agaaaattgggccatctagctgaaatcaaaacaactataattgtcag--acacaagcatcttacaatttaat |
3510977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 81 - 134
Target Start/End: Original strand, 3510530 - 3510583
Alignment:
| Q |
81 |
tcagtactcacatatgctgaaaaatttgaaactgttgagcagtgaagtggtata |
134 |
Q |
| |
|
|||| |||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
3510530 |
tcaggactcacatatgctgaaaattttgaaactggcgagcagtgaagtggtata |
3510583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 601 - 647
Target Start/End: Original strand, 3511057 - 3511103
Alignment:
| Q |
601 |
agacaaatagtggataacataattctaatttaaagttcagtcataaa |
647 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
3511057 |
agacaaaaagaggataacataattctaatttaaaattctgtcataaa |
3511103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 245; Significance: 1e-135; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 150 - 546
Target Start/End: Complemental strand, 31951725 - 31951329
Alignment:
| Q |
150 |
ctgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
249 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31951725 |
ctgaacaaaatggcagctaaaggagcaaaaccactctagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagaccat |
31951626 |
T |
|
| Q |
250 |
ttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcatc |
349 |
Q |
| |
|
|||| |||||||| || || | ||||| ||||| |||||||||||||||||| ||||||||||||| || || ||||| ||||||||||||||||||| |
|
|
| T |
31951625 |
ttccatgtccaggagaagcctcacatacaataacagtagctggattaaaagctcgcacaccggccacatgcaatgtaccattgtctgtgatgatagcatc |
31951526 |
T |
|
| Q |
350 |
agcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggaccaa |
449 |
Q |
| |
|
|||||||||| |||||||||||||| |||| ||||||||||||| |||||||||||||||| ||||| |||| |||||| | |||||||||| ||| |
|
|
| T |
31951525 |
tccagctataattccacttggcccacaatctaatagccctttactaatgcaaaaccatttgggttgtgtttcattctgagtatgcggcctttggggacaa |
31951426 |
T |
|
| Q |
450 |
tgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaa |
546 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31951425 |
tgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaactataagtgtcagacacacaa |
31951329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 149 - 554
Target Start/End: Original strand, 31950874 - 31951279
Alignment:
| Q |
149 |
actgaacaaaaaggcaggtaaaggggcaaaaccaatccagttgggtgggctaagaggtgctgaagttgtaatacttgtcttgggagaaaattccagacca |
248 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31950874 |
actgaacaaaaaggcagctaaaggagcaaaaccactccagttgggtgggctaagaggtgttgaagttgtaatacttgtcttgggagcaaattccagacca |
31950973 |
T |
|
| Q |
249 |
tttccctgtccaggcaaaaccgcccatactataacggtagctggattaaaagctagcacaccggccacgtgtaacataccactgtctgtgatgatagcat |
348 |
Q |
| |
|
|||| |||||| | ||||| ||||||| |||||||||||||||||||||||| || || | ||||| | ||| |||| ||| |||||||||||||| |
|
|
| T |
31950974 |
gttccatgtccatgagaaacctcccatacaataacggtagctggattaaaagcttgcgcagcagccacatacaacgtaccgttgtgtgtgatgatagcat |
31951073 |
T |
|
| Q |
349 |
cagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtaggaggcctttgggacca |
448 |
Q |
| |
|
| ||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||| || | || |||||||||||||||||| |
|
|
| T |
31951074 |
ctccagatataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgccttcttagaaggaggcctttgggacca |
31951173 |
T |
|
| Q |
449 |
atgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtgttagacacacaagc |
548 |
Q |
| |
|
||||||||||||| |||||||| | |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
31951174 |
atgaagttgaaccaatcctgattataatacagaacagacacaaagaaaattgggtcatctagctgaaatcaaaacaactataagtgtcagacacataagc |
31951273 |
T |
|
| Q |
549 |
atctta |
554 |
Q |
| |
|
|||||| |
|
|
| T |
31951274 |
atctta |
31951279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 31951811 - 31951721
Alignment:
| Q |
11 |
cacagaaccaccacgcattggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
101 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||| |
|
|
| T |
31951811 |
cacagaaccaccacacatcagatcaaaggctacccctgctacaccacaacactgggtagtgggcgcaacttcagaactcacatatgctgaa |
31951721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 30 - 101
Target Start/End: Original strand, 31950808 - 31950879
Alignment:
| Q |
30 |
ggatcaaaggctacccctgctacaccacaacaatgggtagagggtgcagcttcagtactcacatatgctgaa |
101 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| | ||||| | ||||||||||| |||||||||| ||||| |
|
|
| T |
31950808 |
ggatcaaaggctacccctactacaccacaacacttggtagtgagtgcagcttcaaaactcacatatactgaa |
31950879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 147; Significance: 4e-77; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 332 - 651
Target Start/End: Complemental strand, 2354629 - 2354311
Alignment:
| Q |
332 |
gtctgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagta |
431 |
Q |
| |
|
|||||||||||||| | || |||||||||| ||||||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
2354629 |
gtctgtgatgatagaaccaccagctataataccacttggctcacaatctaatagccctttactagtgcaaaaccatttgggtcgtgttgcattatgagta |
2354530 |
T |
|
| Q |
432 |
ggaggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataa |
531 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
|
|
| T |
2354529 |
agaggcctttggaaccaatgaagttgaaccgatcctgattgtaatacagaacagacacagagaaaattgggccatctagctgaaatcaaaacaattataa |
2354430 |
T |
|
| Q |
532 |
gtgttagacacacaagcatcttacaatttaattagnnnnnnnnnnnnnnnnnnnncaatcagatattaaagacaaatagtggataacataattctaattt |
631 |
Q |
| |
|
|| ||| |||||||||||||||||||||||| |||| |||||||||||||||| | | ||||||||||||||||||| |
|
|
| T |
2354429 |
gtcacgcacatacaagcatcttacaatttaattag-aaagggaaaacacaaaaagcaattagatattaaagacaaagactagataacataattctaattt |
2354331 |
T |
|
| Q |
632 |
aaagttcagtcataaatgtc |
651 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
2354330 |
aaagttcagtcataaatgtc |
2354311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 335 - 555
Target Start/End: Original strand, 2354640 - 2354860
Alignment:
| Q |
335 |
tgtgatgatagcatcagcagctataatcccacttggcccacattctattagccctttactagtgcaaaaccatttgggcggtgttgcattttgagtagga |
434 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
2354640 |
tgtgatgatagcatctccagctataatcccacttggcccacaatctaatagccctttactagtgcaaaaccatttgggccgtgttgcattctgagtagga |
2354739 |
T |
|
| Q |
435 |
ggcctttgggaccaatgaagttgaacctttcctgattgtgatacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataagtg |
534 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||| | || |||||||||||| || |||||||| |
|
|
| T |
2354740 |
ggcctttcagaccaatgaagttgaaccgatcctgattgtaatacagaacagacacaaagaaaattgggccttttatctgaaatcaaaataattataagtg |
2354839 |
T |
|
| Q |
535 |
ttagacacacaagcatcttac |
555 |
Q |
| |
|
| ||||||||||||||||||| |
|
|
| T |
2354840 |
tcagacacacaagcatcttac |
2354860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 590 - 651
Target Start/End: Original strand, 2354894 - 2354955
Alignment:
| Q |
590 |
tcagatattaaagacaaatagtggataacataattctaatttaaagttcagtcataaatgtc |
651 |
Q |
| |
|
||||||| |||||||||| | ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2354894 |
tcagatactaaagacaaagactggataacatatttctaatttaaagttcagtcataaatgtc |
2354955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 123
Target Start/End: Original strand, 35567823 - 35567868
Alignment:
| Q |
78 |
gcttcagtactcacatatgctgaaaaatttgaaactgttgagcagt |
123 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
35567823 |
gcttcaggactcacatatgccgaaaaatttgaaactggtgagcagt |
35567868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 541
Target Start/End: Complemental strand, 22925947 - 22925838
Alignment:
| Q |
433 |
gaggcctttgggaccaatgaagttgaacctttcctgattgtga-tacagaacagacacagagaaacttgggccatctagctgaaatcaaaacaactataa |
531 |
Q |
| |
|
|||||| ||||||||||||||||||||| || |||| || ||||||| ||||||| ||||| | |||||||||| ||||||||||| ||| | || |
|
|
| T |
22925947 |
gaggccattgggaccaatgaagttgaactaaggctaattgagaatacagaagagacacaaagaaaatcgggccatctaactgaaatcaaagcaattgcaa |
22925848 |
T |
|
| Q |
532 |
gtgttagaca |
541 |
Q |
| |
|
|||||||||| |
|
|
| T |
22925847 |
gtgttagaca |
22925838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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