View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_10 (Length: 322)
Name: NF3880_high_10
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 309
Target Start/End: Original strand, 12181989 - 12182296
Alignment:
| Q |
2 |
ttcataattcacatacaagatgcacattgggagttggaaattgatatccattccatgtgagcaatccttcaannnnnnnaccacattttgctctaacttt |
101 |
Q |
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| T |
12181989 |
ttcataattcacatacaagatgcacatcgggagttggaaattgatatccattccatgtgagcaatccttcaatttttttaccacattttgctctaacttt |
12182088 |
T |
|
| Q |
102 |
atacacatattaactaaaaaacaggattaagccttgggtctagggccatatggctcttttccatgtgctataaatgactttacttctaagggtaatgcaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12182089 |
atacacatattaactaaaaaacaggattaagccttgggtctagggccatatggctcttttccatgtgctataaatgactttacttctaagggtaatgcaa |
12182188 |
T |
|
| Q |
202 |
tttgttcaatccattggccttcatttagggaatcatttagagatcctatgtcattgcctttaggtgtatttcaagttcaagaaaagccatatatagtctt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12182189 |
tttgttcaatccattggccttcatttagggaatcatttagagatcctatgtcattgcctttaggtgtatttcaagttcaagaaaagccatatatagtctt |
12182288 |
T |
|
| Q |
302 |
ttgttcat |
309 |
Q |
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|||||||| |
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| T |
12182289 |
ttgttcat |
12182296 |
T |
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