View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_11 (Length: 321)
Name: NF3880_high_11
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_11 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 29931912 - 29931598
Alignment:
| Q |
7 |
agaagcagagaatgagaggatgcatttgatgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttc |
106 |
Q |
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| T |
29931912 |
agaagcagagaatgagaggatgcatttgatgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttc |
29931813 |
T |
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| Q |
107 |
ttcaatgcattctttgttttttacatcctctcaccaaaaactgcacacaggtttgttggttatttagaggaggaagctgtgatttcatatacacaacatt |
206 |
Q |
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| T |
29931812 |
ttcaatgcattctttgttttttacatactctcaccaaaaactgcacacaggtttgttggttatttagaggaggaagctgtgatttcatatacacaacatt |
29931713 |
T |
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| Q |
207 |
tgaatgcaattgagagtggtaaagttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaaggatgttat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29931712 |
tgaatgcaattgagagtggtaaagttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaaggatgttat |
29931613 |
T |
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| Q |
307 |
cactgttattcgtgc |
321 |
Q |
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| T |
29931612 |
cactgttattcgtgc |
29931598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 7 - 321
Target Start/End: Complemental strand, 29934636 - 29934322
Alignment:
| Q |
7 |
agaagcagagaatgagaggatgcatttgatgacaatggtagagcttgtaaaaccaagttggcatgaaaggcttttggttattactgcacaaggagttttc |
106 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
29934636 |
agaagcagagaatgaaaggatgcatttgatgacaatggttgagcttgtgaaaccaagttggcatgagaggcttttggttattactgcacaaggtgttttc |
29934537 |
T |
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| Q |
107 |
ttcaatgcattctttgttttttacatcctctcaccaaaaactgcacacaggtttgttggttatttagaggaggaagctgtgatttcatatacacaacatt |
206 |
Q |
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| T |
29934536 |
tttaatggattctttgtgttttacatcctctcaccaaaaatagcacataggtttgttggttatttagaggaggaagctgtgatttcatacacacaatatc |
29934437 |
T |
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| Q |
207 |
tgaatgcaattgagagtggtaaagttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgcaactcttaaggatgttat |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||| | |
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| T |
29934436 |
tgaatgcaattgaaagtggtaaagttgaaaatgtacctgctcctgctattgctattgattattggagacttccaaatgatgcaactcttaaggatgttgt |
29934337 |
T |
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| Q |
307 |
cactgttattcgtgc |
321 |
Q |
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| T |
29934336 |
cactgttattcgtgc |
29934322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 231 - 288
Target Start/End: Original strand, 37469718 - 37469775
Alignment:
| Q |
231 |
ttgaaaatgtacctgctcctgctattgcaattgattattggagacttcctaaggatgc |
288 |
Q |
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| T |
37469718 |
ttgaaaatgttcctgctcctgccattgcaatagactattggaggcttcccaaggatgc |
37469775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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