View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_14 (Length: 312)
Name: NF3880_high_14
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_14 |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 31987870 - 31988173
Alignment:
| Q |
1 |
gtctatactatggaatctgcatacatgctcaaaccactgttctcactctaatcatgggcccctcaaattatcatggatatccttaatagctccaaatata |
100 |
Q |
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| T |
31987870 |
gtctatactatggaatctgcatacatgctcaaaccactgttctcactctaatcatgggcccctcaaactatcatggatatccttaatagctc-aaatata |
31987968 |
T |
|
| Q |
101 |
ggcaatccaatcatctttctttactagagcttaacacaaaacctatgttggggccctatcatatgccttctccaaatcaacgaatgacatgtgtaagtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31987969 |
ggcaatccaatcatctttctttactagagcttaacacaaaacctatgttggggccctatcatatgccttctccaaatcaatgaatgacatgtgtaagtct |
31988068 |
T |
|
| Q |
201 |
tttttatccgagtagcaagtaaattgcatcatgatcaacctcccaggcataaaatcaaattatttttcaatcattttggtttcttttcttagtctcttca |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31988069 |
tttttatccgagtagcaagtaaattgcatcatgatcaacctcccaggcataaaatcaaattatttttcaatcattttggtttcttttcttagtctcttct |
31988168 |
T |
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| Q |
301 |
tctca |
305 |
Q |
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||||| |
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| T |
31988169 |
tctca |
31988173 |
T |
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