View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_15 (Length: 307)
Name: NF3880_high_15
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_15 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 53089063 - 53089376
Alignment:
| Q |
11 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat-----------------catggaacttcttggctagttccctttttcc |
93 |
Q |
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| T |
53089063 |
attattctggtaatgtgatgcatatagcatacttatactcgctaaaattcatacaaactcgtcactcatcatggaacttcttggctagttccctttttcc |
53089162 |
T |
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| Q |
94 |
ttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
193 |
Q |
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| T |
53089163 |
ttgaaaaaatacctcctataagtggaatcaatgacttcttcttcttcttcctaagagaagggtgcctttccaacttctcaacaccttgaggtaacatcac |
53089262 |
T |
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| Q |
194 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttcacttcaaaggtt |
293 |
Q |
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| T |
53089263 |
atgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactccatcattaattcttcatcaaatcttgaacttttcacttcaaaggtt |
53089362 |
T |
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| Q |
294 |
gttaaattctcaac |
307 |
Q |
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| T |
53089363 |
gttaaattctcaac |
53089376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 57 - 307
Target Start/End: Original strand, 14333826 - 14334085
Alignment:
| Q |
57 |
attcatcatggaacttcttggctagttccctttttccttgaaaaaatacctccgataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
156 |
Q |
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| T |
14333826 |
attcatcatggaacttcttggttagttccctttttcctagaaaatatgcctccaataagtggaatcaatgacttcttcttcttcttcctaagagaagggt |
14333925 |
T |
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| Q |
157 |
gcctttccaacttctcaacacct---------tgaggtaacatcacatgagaaacagacggtggattcgcgaacgtcacataccttttcttttgaaactc |
247 |
Q |
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| T |
14333926 |
gcctttccaacttctcaacaccttgatgaccttgaggtaacatgacatgagaaactgacggtggattcgcgaacgtcacataccttttcttttgaaattc |
14334025 |
T |
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| Q |
248 |
catcattaattcttcatcaaatcttgaacttttcacttcaaaggttgttaaattctcaac |
307 |
Q |
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| T |
14334026 |
catcattaattcttcatcaaatcttgaacttttcagttcaaaggttgttaaattctcaac |
14334085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 62
Target Start/End: Original strand, 14333763 - 14333814
Alignment:
| Q |
11 |
attattctggtaatgtaatgcatatagcatacttatactcgctaaaattcat |
62 |
Q |
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| T |
14333763 |
attaatctggtaatgtaatgcatgaagcatacttatactcgctaaaattcat |
14333814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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