View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_17 (Length: 300)
Name: NF3880_high_17
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 4 - 253
Target Start/End: Original strand, 23784804 - 23785053
Alignment:
| Q |
4 |
gggtagattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact |
103 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23784804 |
gggttgattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact |
23784903 |
T |
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| Q |
104 |
cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23784904 |
cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa |
23785003 |
T |
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| Q |
204 |
tgggtggaatattagtgaagatcaattgtaccataacatcacttcaatga |
253 |
Q |
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| T |
23785004 |
tgggtggaatattagtgaagatcaattgtaccataacatgacttcaatga |
23785053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 23796511 - 23796267
Alignment:
| Q |
9 |
gattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagac |
108 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23796511 |
gattatccttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagat |
23796412 |
T |
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| Q |
109 |
atcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaatgggt |
208 |
Q |
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| T |
23796411 |
atcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaatgggt |
23796312 |
T |
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| Q |
209 |
ggaatattagtgaagatcaattgtaccataacatcacttcaatga |
253 |
Q |
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| T |
23796311 |
ggaatattagtgaagatcaattgtaccacggcatgacttcaatga |
23796267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 4 - 253
Target Start/End: Complemental strand, 23767323 - 23767074
Alignment:
| Q |
4 |
gggtagattattcttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact |
103 |
Q |
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|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23767323 |
gggttgattatccttctatgcttggtccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaact |
23767224 |
T |
|
| Q |
104 |
cagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcatacaa |
203 |
Q |
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|||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
23767223 |
cagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttccctgcatacaa |
23767124 |
T |
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| Q |
204 |
tgggtggaatattagtgaagatcaattgtaccataacatcacttcaatga |
253 |
Q |
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||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
23767123 |
tgggtggaatattagtgaagatcaattgtaccacggcatgacttcaatga |
23767074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 23785134 - 23785181
Alignment:
| Q |
253 |
aagtttttacgtaagttttttatataaagctaaactatcccaacaaaa |
300 |
Q |
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| T |
23785134 |
aagtttttacgtaagttttttatataaagctaaactatcccaacaaaa |
23785181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 30383706 - 30383595
Alignment:
| Q |
93 |
ctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttc |
192 |
Q |
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||||||||| |||||||||||||| || || ||| ||||||| |||||||| | | | |||||| |||||| ||||||||||||||| |||| || ||| |
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| T |
30383706 |
ctttgggaattcagacatcttgttcaacacatcttttatttgctcaggttctgtcaaagtcacccttggttttattccaaaccaaatataagaattcttc |
30383607 |
T |
|
| Q |
193 |
cctgcatacaat |
204 |
Q |
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|||||||||||| |
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| T |
30383606 |
cctgcatacaat |
30383595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 30393857 - 30393750
Alignment:
| Q |
93 |
ctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttc |
192 |
Q |
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||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||| ||||| | | || |||||| |||||||||||||||||||| || || |
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| T |
30393857 |
ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt |
30393758 |
T |
|
| Q |
193 |
cctgcata |
200 |
Q |
| |
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|||||||| |
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| T |
30393757 |
cctgcata |
30393750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 16 - 200
Target Start/End: Original strand, 41628766 - 41628950
Alignment:
| Q |
16 |
cttctatgcttgctccacttttctccttctagtttaacaagaccgcgagttattaacttcataaacttatattgaacctttgggaactcagacatcttgt |
115 |
Q |
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|||||||||||||||||||||||||| || || | ||||||| | | || |||||| | || ||||| | | |||||| || ||||| || |||| |
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| T |
41628766 |
cttctatgcttgctccacttttctccctcaagacttgcaagaccactaactagtaacttgaaaatcttatgattattctttggaaagtcagagatattgt |
41628865 |
T |
|
| Q |
116 |
tgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttccctgcata |
200 |
Q |
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| T |
41628866 |
tcaatacatctatgatttgctcaggttctgtgagaatcacccttggttttgttccaaaccacataaaagaattcttccctacata |
41628950 |
T |
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