View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_4 (Length: 359)
Name: NF3880_high_4
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 348
Target Start/End: Original strand, 55241867 - 55242214
Alignment:
| Q |
1 |
taaaccaatttaattttattagtttcttacttaacatatataatcaatatagaaatgtaacttttgtaatactgatttttatttatttttgataaagtgc |
100 |
Q |
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| T |
55241867 |
taaaccaatttaattttattagtttcttacttaacatatataatcaatatagaaatgtaacttttgtaatactgatttttatttatttttgataaagtgc |
55241966 |
T |
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| Q |
101 |
acgttgatactcaatttgatatagttgtgttgctagcagaatatccctcctttccatgacatgatgataaagtagaataataggcgcatgcatggatggg |
200 |
Q |
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| T |
55241967 |
acgttgatactcaatttgatatagttgtgttgctagcagaatatccctcctttccatgacatgatgataaagtagaataataggcgcatgcatggatggg |
55242066 |
T |
|
| Q |
201 |
accctatttccgtgaggaatgcccataactaagggggagatttgcttccacacgttttcgatagaaaaaggttttacttttatcaatcaaacataattta |
300 |
Q |
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| T |
55242067 |
accctatttccgtgaggaatgcccataactaagggggagatttgcttccacacgttttcgatagaaaaaggttttacttttatcaatcaaacataattta |
55242166 |
T |
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| Q |
301 |
tattatgaagcttatttttgttaaagactatgatactctctttttctt |
348 |
Q |
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| T |
55242167 |
tattatgaagcttatttttgttaaagactatgatactctctttttctt |
55242214 |
T |
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