View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3880_high_6 (Length: 334)

Name: NF3880_high_6
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3880_high_6
NF3880_high_6
[»] chr4 (3 HSPs)
chr4 (14-334)||(21242674-21242994)
chr4 (14-334)||(21258450-21258760)
chr4 (23-334)||(21253939-21254257)


Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 21242674 - 21242994
Alignment:
Q  14 attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21242674 attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta 21242773  T
Q  114 acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21242774 acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca 21242873  T
Q  214 agaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtt 313  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  21242874 agaacttcatcgcagcgtcgttgatgataaacatggatgatgatttagctggggaattaaacaatgtgttcatctgcgttttaccgatgtttcatgtgtt 21242973  T
Q  314 tggattggcggttataacata 334  Q
    |||||||||||||||||||||    
T  21242974 tggattggcggttataacata 21242994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 14 - 334
Target Start/End: Original strand, 21258450 - 21258760
Alignment:
Q  14 attctctacataacaaactttatatctaataggtaatgcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagta 113  Q
    |||| ||| |||||||||||||||||| |||||||||||||| |||| | |||| ||||||| |||||||||||||||||| |||||||| |||||||||    
T  21258450 attcgctatataacaaactttatatctgataggtaatgcaacaggttgaaattcgaacttcacgagttttgaggcgttgatagaatcagctggggaagta 21258549  T
Q  114 acagaattaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacaca 213  Q
    |||||| ||||||||| | | ||||||||||| || |       |||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  21258550 acagaaataccagaaagcaacgtgaaacagactgaca-------acttctgtactcatcaggaactacaggagtgagcaaaggtgtgatactcacccaca 21258642  T
Q  214 agaacttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgtttcatgtgtt 313  Q
    |||||||||||||  | || ||||||||||||||||||||||||||||| |||||||||   || |||||| ||||||||||||||||||||||||||||    
T  21258643 agaacttcatcgcgacttcattgatgataaacatggatgatgatttagcaggggaatta---aatgtgttcctctgcgttttaccgatgtttcatgtgtt 21258739  T
Q  314 tggattggcggttataacata 334  Q
    | |||||||||||||||||||    
T  21258740 tagattggcggttataacata 21258760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 23 - 334
Target Start/End: Original strand, 21253939 - 21254257
Alignment:
Q  23 ataacaaactttatatctaataggtaat----gcaacgggttcatattcaaacttcaagagttttgaggcgttgattgaatcagcaggggaagtaacaga 118  Q
    ||||||||||||| ||||||||||||||    | |||||||||| ||||||||||||  ||||||||| ||||||||||| ||||| | |||||||||||    
T  21253939 ataacaaactttacatctaataggtaattaatgtaacgggttcaaattcaaacttcaccagttttgagtcgttgattgaaacagcatgagaagtaacaga 21254038  T
Q  119 attaccagaaaacgatgtgaaacagaccgatacagcggcacttttgtactcatcaggaactacaggagtgagcaaaggtgtgattctcacacacaagaac 218  Q
    |||||||||||||||||||||||| | ||||||||||||  | ||||||||||||||||| |||||||||||||| || ||||| || || |||||||||    
T  21254039 attaccagaaaacgatgtgaaacaaagcgatacagcggctttgttgtactcatcaggaacaacaggagtgagcaagggcgtgatacttacccacaagaac 21254138  T
Q  219 ttcatcgcagcatcgttgatgataaacatggatgatgatttagctggggaattaaacaacgtgttcatctgcgttttaccgatgt---ttcatgtgtttg 315  Q
     |||| || |   |||| ||||| |||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||   |||||||||||     
T  21254139 gtcattgcggtggcgttaatgattaacatggacgatgatttagcaggggaattaaacaacgtgttcttctgcgttttaccgatgtttattcatgtgttta 21254238  T
Q  316 gattggcggttataacata 334  Q
    |||||| ||||||||||||    
T  21254239 gattggtggttataacata 21254257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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