View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_high_8 (Length: 328)
Name: NF3880_high_8
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 5 - 294
Target Start/End: Complemental strand, 30540805 - 30540516
Alignment:
| Q |
5 |
ttatagtctttgctagacgtggatgttgtatgagccatgtcgtgaagcacttgcttctcggtcttggtgttaatcctgctgtacatgaggttgaggagaa |
104 |
Q |
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| T |
30540805 |
ttatagtctttgctagacgtggatgttgtatgagccatgtcgtgaagcgcttgcttctcggtcttggtgttaatcctgctgtacatgaggttgaggagaa |
30540706 |
T |
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| Q |
105 |
agatgaagttggtgtggttaaagaattggaatcaatttcaaatgaagagaaggttcaatttccagcagtgtttataggtggaaatttgtttggaggattg |
204 |
Q |
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||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30540705 |
agatgaagttggtttggttaaagaattggaatcaattgcaaatgaagagaaggttcaatttccagcagtgtttataggtggaaatttgtttggaggactg |
30540606 |
T |
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| Q |
205 |
gatcgaattatggccactcatatttctggtgaattggtccccattcttaaacaagcaggagctttatggctttgactcattaatatcata |
294 |
Q |
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| T |
30540605 |
gatcgaattatggccactcatatttctggtgaattggtccccattcttaaacaagcaggagctttatggctttgactcattaatatcata |
30540516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 275
Target Start/End: Complemental strand, 38910144 - 38910041
Alignment:
| Q |
172 |
gtgtttataggtggaaatttgtttggaggattggatcgaattatggccactcatatttctggtgaattggtccccattcttaaacaagcaggagctttat |
271 |
Q |
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|||||||||||||| || |||||||| ||||||||||| | ||||| ||||||||||||||||||||||| || | ||||||||||| |||||||||| |
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| T |
38910144 |
gtgtttataggtggtaagttgtttggtggattggatcgtctcatggctactcatatttctggtgaattggttccattgcttaaacaagctggagctttat |
38910045 |
T |
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| Q |
272 |
ggct |
275 |
Q |
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|||| |
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| T |
38910044 |
ggct |
38910041 |
T |
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