View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3880_high_9 (Length: 324)

Name: NF3880_high_9
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3880_high_9
NF3880_high_9
[»] chr1 (14 HSPs)
chr1 (1-130)||(19277890-19278018)
chr1 (198-282)||(19277729-19277813)
chr1 (76-132)||(36490886-36490942)
chr1 (72-125)||(25465272-25465325)
chr1 (72-124)||(1502731-1502783)
chr1 (72-132)||(6180293-6180353)
chr1 (72-121)||(23576425-23576474)
chr1 (72-125)||(32201738-32201791)
chr1 (72-125)||(35512839-35512892)
chr1 (72-124)||(1366162-1366214)
chr1 (72-124)||(13321991-13322043)
chr1 (72-132)||(22167442-22167502)
chr1 (72-116)||(34802090-34802134)
chr1 (72-124)||(39310797-39310849)
[»] chr8 (15 HSPs)
chr8 (240-306)||(6890627-6890693)
chr8 (72-132)||(28014869-28014929)
chr8 (56-125)||(14961657-14961727)
chr8 (72-125)||(2161501-2161554)
chr8 (72-132)||(9580120-9580180)
chr8 (72-132)||(27874692-27874752)
chr8 (72-121)||(3306066-3306115)
chr8 (72-125)||(5573400-5573453)
chr8 (72-125)||(16445747-16445800)
chr8 (92-121)||(21369241-21369270)
chr8 (72-125)||(26364001-26364054)
chr8 (56-111)||(6818145-6818201)
chr8 (56-115)||(10129227-10129287)
chr8 (72-132)||(38212955-38213015)
chr8 (76-132)||(45006077-45006132)
[»] chr4 (14 HSPs)
chr4 (72-132)||(24684944-24685004)
chr4 (55-125)||(40049672-40049743)
chr4 (245-311)||(29462383-29462449)
chr4 (72-132)||(18882278-18882338)
chr4 (72-132)||(19450911-19450971)
chr4 (72-132)||(34941385-34941445)
chr4 (75-125)||(50352416-50352466)
chr4 (234-283)||(13502615-13502664)
chr4 (72-132)||(19468301-19468361)
chr4 (72-132)||(52391405-52391465)
chr4 (234-304)||(9739720-9739791)
chr4 (72-125)||(39876944-39876997)
chr4 (72-124)||(9759153-9759205)
chr4 (72-132)||(17409931-17409991)
[»] chr3 (14 HSPs)
chr3 (56-132)||(50204510-50204587)
chr3 (55-125)||(10307880-10307951)
chr3 (75-130)||(23803060-23803115)
chr3 (55-132)||(31318748-31318826)
chr3 (72-125)||(2571382-2571435)
chr3 (245-286)||(39436090-39436131)
chr3 (72-132)||(8165753-8165813)
chr3 (72-132)||(51401547-51401607)
chr3 (72-132)||(51618154-51618214)
chr3 (72-124)||(38277448-38277500)
chr3 (72-132)||(42180159-42180219)
chr3 (72-132)||(46492354-46492414)
chr3 (248-304)||(49215586-49215642)
chr3 (72-132)||(54527717-54527777)
[»] chr2 (12 HSPs)
chr2 (72-125)||(9747431-9747484)
chr2 (72-125)||(7757797-7757850)
chr2 (54-130)||(29157821-29157898)
chr2 (72-125)||(38248431-38248484)
chr2 (72-124)||(24729588-24729640)
chr2 (73-125)||(34213961-34214013)
chr2 (76-125)||(5583573-5583622)
chr2 (72-121)||(26003357-26003406)
chr2 (72-132)||(7720222-7720282)
chr2 (72-124)||(8065238-8065290)
chr2 (72-116)||(8770897-8770941)
chr2 (72-116)||(15411633-15411677)
[»] chr7 (13 HSPs)
chr7 (72-132)||(4969880-4969940)
chr7 (245-308)||(30588144-30588207)
chr7 (72-121)||(8091323-8091372)
chr7 (72-125)||(25709410-25709463)
chr7 (72-125)||(34270375-34270428)
chr7 (72-125)||(44473523-44473576)
chr7 (72-125)||(46290124-46290177)
chr7 (72-132)||(26037200-26037260)
chr7 (72-132)||(29398145-29398205)
chr7 (72-124)||(33072096-33072148)
chr7 (72-132)||(45501566-45501626)
chr7 (72-125)||(33343102-33343155)
chr7 (234-274)||(5030183-5030223)
[»] chr6 (5 HSPs)
chr6 (72-132)||(34692461-34692521)
chr6 (72-125)||(14228137-14228190)
chr6 (72-125)||(17552598-17552651)
chr6 (72-125)||(28943780-28943833)
chr6 (72-130)||(30591174-30591232)
[»] chr5 (9 HSPs)
chr5 (72-132)||(3398327-3398387)
chr5 (55-125)||(30839895-30839966)
chr5 (72-125)||(36597693-36597746)
chr5 (245-305)||(4524057-4524117)
chr5 (72-132)||(23995427-23995487)
chr5 (80-124)||(30893469-30893513)
chr5 (234-308)||(12516932-12517007)
chr5 (72-125)||(41350316-41350369)
chr5 (72-116)||(30893752-30893796)
[»] scaffold0192 (1 HSPs)
scaffold0192 (72-121)||(13574-13623)
[»] scaffold0229 (1 HSPs)
scaffold0229 (72-124)||(24538-24590)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 8e-52; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 19278018 - 19277890
Alignment:
Q  1 agttgtacttagacaaaactgcttcctacgttccttaatataggagtattttacaaaaatggtttttct-taatgtgcaaattttaacatgttcagaagt 99  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||    
T  19278018 agttgtacttagacaaaagtgcttcctacgttccttaata--ggagtattttacaaaaatgttttttctataatgtgcaaattttaacatgttcagaagt 19277921  T
Q  100 ttaaaatagtaattttgcattggaacgtgta 130  Q
    |||||||||||||||||||||||||||||||    
T  19277920 ttaaaatagtaattttgcattggaacgtgta 19277890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 198 - 282
Target Start/End: Complemental strand, 19277813 - 19277729
Alignment:
Q  198 gagtacaatattgcatatgttagagaaaccctcactaaaattatggatattaagaaaaattgtttgagtaataaatttatctgaa 282  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19277813 gagtacaatattgcatatgttagagaaaccctcacaaaaattatggatattaaaaaaaattgtttgagtaataaatttatctgaa 19277729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 36490942 - 36490886
Alignment:
Q  76 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||  ||||||| |||||||||||||||||| ||||||||||||| ||||||    
T  36490942 gcaaatttgcacatgttaagaagtttaaaatagtaactttgcattggaacttgtaca 36490886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 25465325 - 25465272
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| ||||||| |||||||||| |||||||||||||    
T  25465325 atgtgcaaatttgcacatgttaagaagttcaaaatagtaaatttgcattggaac 25465272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 1502731 - 1502783
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  1502731 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 1502783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 6180353 - 6180293
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||||||| ||||||    
T  6180353 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaacttgtaca 6180293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 23576425 - 23576474
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  23576425 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattg 23576474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 32201791 - 32201738
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  |||| || |||||||||||||| ||| |||||||||||||    
T  32201791 atgtgcaaatttgcacatattaagaagtttaaaataataaatttgcattggaac 32201738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 35512892 - 35512839
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  ||||||||    
T  35512892 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaac 35512839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 1366214 - 1366162
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||  |||| |||||||||||||||||| |||||||    
T  1366214 atgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaa 1366162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 13322043 - 13321991
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  | ||||| ||||||||||||||| ||||||| |||||||    
T  13322043 atgtgcaaatttgcatatgttaagaagtttaaaatagaaattttgtattggaa 13321991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 22167502 - 22167442
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  22167502 atgtgcaaatttgcacatgataagaagtttaaaatagaaactttgtattggaacttgtaca 22167442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 34802134 - 34802090
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 116  Q
    ||||||||||||  ||||||| ||||||||||||| |||||||||    
T  34802134 atgtgcaaatttgcacatgttaagaagtttaaaatggtaattttg 34802090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 39310797 - 39310849
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||| | ||||||||||||| ||||||| |||||||    
T  39310797 atgtgcaaatttgcacatgttaaaaagtttaaaatagaaattttgtattggaa 39310849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 240 - 306
Target Start/End: Complemental strand, 6890693 - 6890627
Alignment:
Q  240 atggatattaagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaattg 306  Q
    |||||| ||||||||||||||| ||||||||||||||| |||||| || |||||||||| |||||||    
T  6890693 atggattttaagaaaaattgttggagtaataaatttatgtgaaaagtgtgtaactattattaaattg 6890627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 28014869 - 28014929
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  28014869 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 28014929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 125
Target Start/End: Original strand, 14961657 - 14961727
Alignment:
Q  56 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    |||| ||||||||| | ||||||||||||  ||||| | ||||||||||||||||||||||| ||||||||    
T  14961657 aaaagggtttttctatcatgtgcaaatttgcacatgctaagaagtttaaaatagtaattttgtattggaac 14961727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 2161554 - 2161501
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  2161554 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 2161501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 9580120 - 9580180
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||| ||| ||||||    
T  9580120 atgtgcaaatttacacatgttaagaagtttaaaatagaaattttgtattgaaacttgtaca 9580180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 27874692 - 27874752
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  27874692 atgtgcaaatttgcacatgttaagaagtttaaaatacaaattttgtattggaacttgtaca 27874752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 3306066 - 3306115
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||    
T  3306066 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattg 3306115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 5573453 - 5573400
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||||||||||||| || ||||||||| ||||    
T  5573453 atgtgcaaatttgtacatgttaagaagtttaaaataatacttttgcattagaac 5573400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 16445747 - 16445800
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  |||| || ||||||||||||||| ||||||| ||||||||    
T  16445747 atgtgcaaatttgcacatattaagaagtttaaaatagaaattttgtattggaac 16445800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 121
Target Start/End: Original strand, 21369241 - 21369270
Alignment:
Q  92 tcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||||||||||||||||||||    
T  21369241 tcagaagtttaaaatagtaattttgcattg 21369270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 26364001 - 26364054
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||   |||||| |||| ||||||||||||| |||||||||||||    
T  26364001 atgtgcaaatttgcgcatgttaagaaatttaaaatagtaactttgcattggaac 26364054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 111
Target Start/End: Complemental strand, 6818201 - 6818145
Alignment:
Q  56 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaa 111  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||||||||||    
T  6818201 aaaagggtttttctatcatgtgcaaatttgtacatgttaagaagtttaaaatagtaa 6818145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 10129287 - 10129227
Alignment:
Q  56 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaatttt 115  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||| ||||||||||    
T  10129287 aaaagggtttttctatcatgtgcaaatttgcacatgttaagaagtttaaagtagtaatttt 10129227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 38212955 - 38213015
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||| ||| ||||||    
T  38212955 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattgaaacttgtaca 38213015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 45006132 - 45006077
Alignment:
Q  76 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  45006132 gcaaatttgcacatgttaagaagtttaaaatag-aattttgtattggaacatgtaca 45006077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 24685004 - 24684944
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| |||||||||||||||| ||||||    
T  24685004 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgcattggaacttgtaca 24684944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 40049743 - 40049672
Alignment:
Q  55 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  40049743 aaaaagggtttttctattatgtgcaaatttgcacatgttaagaaatttaaaatagtaattttgcattggaac 40049672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 29462383 - 29462449
Alignment:
Q  245 tattaagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaattgccttt 311  Q
    ||||||||||||||||   |||||||||||||| ||||||||  |||||||||||||||||| ||||    
T  29462383 tattaagaaaaattgtcgcagtaataaatttatgtgaaaaatttgtaactattactaaattgtcttt 29462449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 18882278 - 18882338
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  18882278 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 18882338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 19450911 - 19450971
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  19450911 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 19450971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 34941445 - 34941385
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    |||||| |||||  ||||| | |||||||||||||||||||||||||||||||| ||||||    
T  34941445 atgtgcgaatttgcacatgataagaagtttaaaatagtaattttgcattggaacttgtaca 34941385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 75 - 125
Target Start/End: Complemental strand, 50352466 - 50352416
Alignment:
Q  75 tgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    |||||||||  ||||||| |||| |||||||||||||||||||||||||||    
T  50352466 tgcaaatttgcacatgttaagaaatttaaaatagtaattttgcattggaac 50352416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 283
Target Start/End: Complemental strand, 13502664 - 13502615
Alignment:
Q  234 aaaattatggatattaagaaaaattgtttgagtaataaatttatctgaaa 283  Q
    ||||||| ||||||||| |||| ||||||||||||||||||| |||||||    
T  13502664 aaaattacggatattaaaaaaagttgtttgagtaataaatttgtctgaaa 13502615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 19468361 - 19468301
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||| ||| ||||||    
T  19468361 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattgaaacttgtaca 19468301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 52391465 - 52391405
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||| ||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  52391465 atgtgtaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 52391405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 9739791 - 9739720
Alignment:
Q  234 aaaattatggatattaagaaaaattgtttgagtaataaatttatctga-aaaatgcgtaactattactaaat 304  Q
    ||||| |||| |||||| ||||||||||  | |||||||||||||||| |||||| || |||||||||||||    
T  9739791 aaaatcatgggtattaaaaaaaattgttgtattaataaatttatctgaaaaaatgtgttactattactaaat 9739720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 39876997 - 39876944
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||| ||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  39876997 atgtgtaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 39876944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 9759153 - 9759205
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    |||| |||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  9759153 atgtacaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 9759205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 17409991 - 17409931
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||| | ||||||||||||||| || |||| |||||||| ||||||    
T  17409991 atgtgcaaatttgcacatgataagaagtttaaaatagaaactttgtattggaacttgtaca 17409931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 132
Target Start/End: Complemental strand, 50204587 - 50204510
Alignment:
Q  56 aaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    |||| ||||||||| | ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  50204587 aaaagggtttttctatcatgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacctgtaca 50204510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 10307951 - 10307880
Alignment:
Q  55 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  10307951 aaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaaatttgcattggaac 10307880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 23803060 - 23803115
Alignment:
Q  75 tgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 130  Q
    |||||||||  ||||||| ||||||||||||||| |||||||||||||||| ||||    
T  23803060 tgcaaatttgcacatgttaagaagtttaaaatagaaattttgcattggaacttgta 23803115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 132
Target Start/End: Complemental strand, 31318826 - 31318748
Alignment:
Q  55 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||| ||||||| | ||||| ||||||  ||||||| |||||||||| |||| |||||||||||||||| ||||||    
T  31318826 aaaaatgttttttctatcatgtgaaaatttgcacatgttaagaagtttaagatagaaattttgcattggaacttgtaca 31318748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 2571435 - 2571382
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  2571435 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 2571382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 286
Target Start/End: Complemental strand, 39436131 - 39436090
Alignment:
Q  245 tattaagaaaaattgtttgagtaataaatttatctgaaaaat 286  Q
    ||||||||||||||||||||||||||||||| ||| ||||||    
T  39436131 tattaagaaaaattgtttgagtaataaatttgtctaaaaaat 39436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 8165813 - 8165753
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  8165813 atgtgcaaatttgcacatgttaagaagtttaaaatataaattttgtattggaacttgtaca 8165753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 51401607 - 51401547
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    |||| |||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  51401607 atgtacaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 51401547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 51618214 - 51618154
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| |||||||| |||| |||| ||||||||||||| ||||||    
T  51618214 atgtgcaaatttgcacatgttaagaagtttcaaattgtaactttgcattggaacttgtaca 51618154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 38277500 - 38277448
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||| ||||||  ||||||| ||||||||||||||| ||||||| |||||||    
T  38277500 atgtgtaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaa 38277448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 42180219 - 42180159
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||| ||||||  ||||||| ||||||||||||||  ||||||| |||||||| ||||||    
T  42180219 atgtgtaaatttgcacatgttaagaagtttaaaataaaaattttgtattggaacttgtaca 42180159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 46492354 - 46492414
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||| ||| ||| |||| |||||| |||||| ||||||||| ||| ||||||    
T  46492354 atgtgcaaattttcacacgttaagaaatttaaagtagtaactttgcattgaaacttgtaca 46492414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 304
Target Start/End: Original strand, 49215586 - 49215642
Alignment:
Q  248 taagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaat 304  Q
    |||||||||||| | | ||||||||||| | ||| ||||| ||||||||||||||||    
T  49215586 taagaaaaattgctggcgtaataaatttgtttgataaatgtgtaactattactaaat 49215642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 54527717 - 54527777
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| |||| |||||||||  ||||||| |||||||| ||||||    
T  54527717 atgtgcaaatttgcacatgttaagaaatttaaaatataaattttgtattggaacttgtaca 54527777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 9747484 - 9747431
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||  |||||||    
T  9747484 atgtgcaaattttcacatgttaagaagtttaaaatagtaattttgtcttggaac 9747431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 7757797 - 7757850
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  7757797 atgtgcaaatttacacatgttaagaaatttaaaatagtaactttgcattggaac 7757850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 29157821 - 29157898
Alignment:
Q  54 caaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 130  Q
    |||||| ||||||||| | ||||||||||||  ||||||| |||| ||| ||||||||| ||||||||||||| ||||    
T  29157821 caaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaattttaaatagtaactttgcattggaacttgta 29157898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 38248431 - 38248484
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||||||| |||||||||    
T  38248431 atgtgcaaatttgcacatgttaagaaatttaaaatagtaattttacattggaac 38248484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 24729588 - 24729640
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  24729588 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaa 24729640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 34213961 - 34214013
Alignment:
Q  73 tgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    |||||||||||  ||||||| |||| ||||||||||||||||| |||||||||    
T  34213961 tgtgcaaatttgcacatgttaagaaatttaaaatagtaatttttcattggaac 34214013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 125
Target Start/End: Original strand, 5583573 - 5583622
Alignment:
Q  76 gcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  5583573 gcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 5583622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 26003357 - 26003406
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| ||||    
T  26003357 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattg 26003406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 7720282 - 7720222
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  || |||| | |||||||| |||| ||||||| |||||||||||||||    
T  7720282 atgtgcaaatttgcacgtgttaaaaagtttaagatagaaattttgtattggaacgtgtaca 7720222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 8065290 - 8065238
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||  |||||||    
T  8065290 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttatattggaa 8065238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 8770897 - 8770941
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 116  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||||    
T  8770897 atgtgcaaatttgcacatgttaagaagtttaaagtagtaattttg 8770941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 15411633 - 15411677
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 116  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||||    
T  15411633 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttg 15411677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 4969940 - 4969880
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  4969940 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 4969880  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 245 - 308
Target Start/End: Original strand, 30588144 - 30588207
Alignment:
Q  245 tattaagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaattgcc 308  Q
    ||||||||||| |||||  |||||||||||||| ||||| ||| || |||||||||||||||||    
T  30588144 tattaagaaaagttgttgaagtaataaatttatttgaaatatgtgttactattactaaattgcc 30588207  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 8091323 - 8091372
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||||||||    
T  8091323 atgtgcaaatttacacatgttaagaagtttaaaatagtaactttgcattg 8091372  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 25709410 - 25709463
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||||||||||||||||| |||| ||||||||    
T  25709410 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttgtattggaac 25709463  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 34270428 - 34270375
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  34270428 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 34270375  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 44473523 - 44473576
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    |||||||||||| |||||||| ||||||||||||||| ||||||| ||| ||||    
T  44473523 atgtgcaaatttgaacatgttaagaagtttaaaatagaaattttgtatttgaac 44473576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 46290177 - 46290124
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  46290177 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 46290124  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 26037260 - 26037200
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  | ||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  26037260 atgtgcaaatttgcagatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 26037200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 29398145 - 29398205
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    |||| |||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  29398145 atgttcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 29398205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 33072148 - 33072096
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||| |||| ||||||||||||| ||||||||||||    
T  33072148 atgtgcaaatttgtacatgttaagaaatttaaaatagtaactttgcattggaa 33072096  T

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Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 45501626 - 45501566
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  |||| || ||||||||||||||| ||||||| |||||||| ||||||    
T  45501626 atgtgcaaatttgcacatcttaagaagtttaaaatagaaattttgtattggaacttgtaca 45501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 33343155 - 33343102
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||| ||||||||    
T  33343155 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgtattggaac 33343102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 5030183 - 5030223
Alignment:
Q  234 aaaattatggatattaagaaaaattgtttgagtaataaatt 274  Q
    |||||||  ||||||||||||||||||| ||||||||||||    
T  5030183 aaaattacagatattaagaaaaattgttggagtaataaatt 5030223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 34692521 - 34692461
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  34692521 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 34692461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 14228137 - 14228190
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  14228137 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 14228190  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 17552598 - 17552651
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||||| |||||||||||    
T  17552598 atgtgcaaatttgcacatgttaagaaatttaaaatagtaattatgcattggaac 17552651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Original strand, 28943780 - 28943833
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  28943780 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 28943833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 30591174 - 30591232
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgta 130  Q
    ||||||||||||  ||||||| |||||||| |||| |||||||||||||| ||| ||||    
T  30591174 atgtgcaaatttacacatgttaagaagttttaaatggtaattttgcattgtaacttgta 30591232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 3398387 - 3398327
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||| ||||||| |||||||| ||||||    
T  3398387 atgtgcaaatttgcacatgttaagaagtttaaaatagaaattttgtattggaacttgtaca 3398327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 30839966 - 30839895
Alignment:
Q  55 aaaaatggtttttct-taatgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||| ||||||||| | ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  30839966 aaaaagggtttttctatcatgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 30839895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 36597746 - 36597693
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| |||| ||||||||||||| |||||||||||||    
T  36597746 atgtgcaaatttgcacatgttaagaaatttaaaatagtaactttgcattggaac 36597693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 305
Target Start/End: Complemental strand, 4524117 - 4524057
Alignment:
Q  245 tattaagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaatt 305  Q
    ||||||||||| ||||| ||||||||||||| |||||||  || || ||||||||||||||    
T  4524117 tattaagaaaagttgttggagtaataaatttgtctgaaatgtgtgtgactattactaaatt 4524057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 23995427 - 23995487
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaacgtgtaca 132  Q
    ||||||||||||  ||||||| ||||||||||||||||||||||  |||| ||| ||||||    
T  23995427 atgtgcaaatttgtacatgttaagaagtttaaaatagtaattttatattgaaacttgtaca 23995487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Complemental strand, 30893513 - 30893469
Alignment:
Q  80 attttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||| ||||||| |||||||||||||||||| ||||||||||||    
T  30893513 attttcacatgttaagaagtttaaaatagtaactttgcattggaa 30893469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 12517007 - 12516932
Alignment:
Q  234 aaaattatggatatt-aagaaaaattgtttgagtaataaatttatctgaaaaatgcgtaactattactaaattgcc 308  Q
    ||||||||||||||| || |||||||||| || | |||||||| ||| ||||||  || |||||||||||||||||    
T  12517007 aaaattatggatatttaaaaaaaattgttagattgataaatttgtctaaaaaataggttactattactaaattgcc 12516932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 41350369 - 41350316
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaac 125  Q
    ||||||||||||  ||||||| ||||||||||| |||||||||||  |||||||    
T  41350369 atgtgcaaatttgcacatgttaagaagtttaaagtagtaattttgacttggaac 41350316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 116
Target Start/End: Complemental strand, 30893796 - 30893752
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttg 116  Q
    ||||||||||||  ||||||| |||||||||||||||||| ||||    
T  30893796 atgtgcaaatttgcacatgttaagaagtttaaaatagtaactttg 30893752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0192 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0192
Description:

Target: scaffold0192; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 13574 - 13623
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattg 121  Q
    ||||||||||||  ||||||| ||||||||||| |||||| |||||||||    
T  13574 atgtgcaaatttgcacatgttaagaagtttaaattagtaagtttgcattg 13623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 24538 - 24590
Alignment:
Q  72 atgtgcaaattttaacatgttcagaagtttaaaatagtaattttgcattggaa 124  Q
    ||||||||||||  ||||||  |||| |||||||||||||||||| |||||||    
T  24538 atgtgcaaatttacacatgtaaagaaatttaaaatagtaattttgtattggaa 24590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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