View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_low_2 (Length: 376)
Name: NF3880_low_2
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 367
Target Start/End: Complemental strand, 22050114 - 22049767
Alignment:
| Q |
20 |
actacgtgcgaattgttggacctgacggatttgaattgagttgcaaagttctaaagaggaacaaaggcaacaaatcatggactgaattcggaagggactg |
119 |
Q |
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| T |
22050114 |
actacgtgcgaattgttggacctgacggatttgaattcagttgcaaagttctaaagaggaagaaaggcaaaaaatcatggactgaattcggaagggactg |
22050015 |
T |
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| Q |
120 |
gaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataatggttgcaaaaatg |
219 |
Q |
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| T |
22050014 |
gaatttgtttacactattgaacaaatgtaaggaaggagatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataatggttgcaaaaatg |
22049915 |
T |
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| Q |
220 |
tgatttggttaggaatctatgtcaattagtatatttgtgttgaagtacaataatatgttatctatcatataagtttagatctatctaccattatgtctgt |
319 |
Q |
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| T |
22049914 |
tgatttggttatgaatctatgtcaattagtatctttgtgttgaagtgcaataatatgttatctgtcatataagtttggatctatctaccattatgtctgt |
22049815 |
T |
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| Q |
320 |
aacaaatctcatgtcatgatcaattatatgtaatttgtttagtattat |
367 |
Q |
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| T |
22049814 |
aacaaatctcatgtcatcatcaattatatgtaatttgtttagtattat |
22049767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 22059401 - 22059336
Alignment:
| Q |
61 |
tgcaaagttctaaagaggaacaaaggcaacaaatcatggactgaattcggaagggactggaatttg |
126 |
Q |
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| T |
22059401 |
tgcaatgttctgaaaaggaacaaaggcagaaaatcatggacttaatttggaagcgactggaatttg |
22059336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 31772103 - 31772156
Alignment:
| Q |
73 |
aagaggaacaaaggcaacaaatcatggactgaattcggaagggactggaatttg |
126 |
Q |
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| T |
31772103 |
aagaggaacaaaggcaacagatcttggactgagtttggaagtgactggaatttg |
31772156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 22059305 - 22059257
Alignment:
| Q |
157 |
gatgttttgaagtttcgatttgtcaatcataatcactcaaatcttataa |
205 |
Q |
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| T |
22059305 |
gatgttttgaagttccgatttgtcgatcataatcgttcaaatctaataa |
22059257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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