View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3880_low_3 (Length: 309)
Name: NF3880_low_3
Description: NF3880
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3880_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 243
Target Start/End: Complemental strand, 46238729 - 46238503
Alignment:
| Q |
17 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238729 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacatctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
46238630 |
T |
|
| Q |
117 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46238629 |
atagcatgcatattcataggagtaaacagaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
46238530 |
T |
|
| Q |
217 |
tcgattgtccttcgatcgtttcatgca |
243 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46238529 |
tcgattgtccttcgatcgtttcatgca |
46238503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 3455929 - 3456155
Alignment:
| Q |
17 |
acaagttcacatcaattaaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
116 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455929 |
acaagttcacatcaatttaaaaccctaaaaaattcacaacttctttaacgttttcctccttttcctcgttaacagtaccacaacaagaataaacaaagaa |
3456028 |
T |
|
| Q |
117 |
atagcatgcatattcataggagtaaagggaggaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
216 |
Q |
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||||||||||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3456029 |
atagcatgcatattcttaggagtaaacagaagaaagtaaagggattcacataatagacaacttacatcagcaactggagctccaacgtttttcataaccg |
3456128 |
T |
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| Q |
217 |
tcgattgtccttcgatcgtttcatgca |
243 |
Q |
| |
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||||||| |||||||| ||||| |||| |
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| T |
3456129 |
tcgattgcccttcgattgtttcctgca |
3456155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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