View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_high_2 (Length: 488)
Name: NF3881_high_2
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 480
Target Start/End: Original strand, 47619773 - 47620230
Alignment:
| Q |
17 |
cctcctacgttgagtttgtcgacgccttctttcccacgccatgtctcctggtgttccacacattgatagttgctttgttagacgtttccttttcttaaac |
116 |
Q |
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| T |
47619773 |
cctcctacgttgagtttgtcgacgccttctttcccacgccatgtctcctggtgttccacacattgatagttgctttgttagacgtttccttttcttaaac |
47619872 |
T |
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| Q |
117 |
gccaatgcctcggccttctgatcagaatgttcctgttgcaactcttcctcttgatctgaaaactcgttttcgcagactcctcctccctgtaacactattt |
216 |
Q |
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| T |
47619873 |
gccaatgcctcggccttctgatcagaatgttcctgttgcaactcttcctcctgatctgaaaactcgttttcgcagactcctcctccctgtaacactattt |
47619972 |
T |
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| Q |
217 |
cctcgctactcataatattaattatgaattttgatgattaattagtaatggtggtgatggtgatggtgacagccgaggcagttaggaagctgcctcgccg |
316 |
Q |
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| T |
47619973 |
cctcgctactcataatattaattatgaattttgatgattaattagtaatgg------tggtgatggtgacagccgaggcagttaggaagctgcctcgccg |
47620066 |
T |
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| Q |
317 |
tgccgcgtcgccgtgaagggaagagtaattgaaataaagaatgaaaggtgaaaatgtctggaatggtatgtttaattaaatagaagtctaataataaggg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47620067 |
tgccgcgtcgccgtgaagggaagagtaattgaaataaagaatgaaaggtgaaaatgtctggaatggtatgtttaattaaatagaagtctaataataaggg |
47620166 |
T |
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| Q |
417 |
attcagttaatttggtgtttgatattctcaccattcattttttgtaactacctgcagaataata |
480 |
Q |
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| T |
47620167 |
attcagttaatttggtgtttgatattctcaccattcattttttgtaactacctgcagcataata |
47620230 |
T |
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