View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_high_22 (Length: 238)
Name: NF3881_high_22
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 41 - 209
Target Start/End: Original strand, 4840890 - 4841060
Alignment:
| Q |
41 |
aaaataactaaggcagtgcaaagaaacacaaaaacacagtgcctctcctactttcccataatttactactatgggaaattgcaaagtataatacaattga |
140 |
Q |
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| T |
4840890 |
aaaataactaaggcagtgcaaagaaacacaaaaacacagtgcctctcctactttcccataatttactactatgggaaattgcaaagtataatacaattga |
4840989 |
T |
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| Q |
141 |
atcaagcattaagcctcaaattttgact--nnnnnnntaaagtgatgttttaagccacatatcattaagcc |
209 |
Q |
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| T |
4840990 |
atcaagcattaagcctcaaattttgactaaaaataaataaagtgatgttttaagccacatatcattaagcc |
4841060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 4831919 - 4832046
Alignment:
| Q |
105 |
actactatgggaaattgcaaagtataatacaattgaatcaagcattaagcctcaaattttgac-tnnnnnnntaaagtgatgttttaagccacatatcat |
203 |
Q |
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| T |
4831919 |
actactatgggaaattacaaagtataatacaattgaatcaagcattaagcctcaaattttgacttaaaaaaataaagtgatgttttaagccacatatcat |
4832018 |
T |
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| Q |
204 |
taagccatggatcaagtggcataccaat |
231 |
Q |
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| T |
4832019 |
taagccatggatcaagtggcataccaat |
4832046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 4831831 - 4831904
Alignment:
| Q |
35 |
ctcgctaaaataactaaggcagtgcaaagaaacacaaa--aacacagtgcctctcctactttcccataatttac |
106 |
Q |
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| T |
4831831 |
ctcggtaaaataactaaggcagtgcaaagaaacacaaatgctcatagtgtctctcctactttcctataatttac |
4831904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 4805902 - 4805939
Alignment:
| Q |
131 |
atacaattgaatcaagcattaagcctcaaattttgact |
168 |
Q |
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| T |
4805902 |
atacaattgaatcaagcatgaagcctcaaattttgact |
4805939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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