View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_high_7 (Length: 408)
Name: NF3881_high_7
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 19 - 396
Target Start/End: Complemental strand, 8556693 - 8556316
Alignment:
| Q |
19 |
tagtgattaacacctcttttgaaaggagtgctataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttca |
118 |
Q |
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| T |
8556693 |
tagtgattaacacctcttttgaaaggagtggtataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttca |
8556594 |
T |
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| Q |
119 |
gcactgaatcagtcaacacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagccaacggtaagggtcgggaacattaacgcc |
218 |
Q |
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| T |
8556593 |
gcactgaatcagtcaaaacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagccaacggtaagggtcgggaacattaacgcc |
8556494 |
T |
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| Q |
219 |
gtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttcatcaaacacagaaagtgaacccatttttcttctatagctgtta |
318 |
Q |
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| T |
8556493 |
gtgatagttgtcaatgacggagtcgtttctgcgagcaatgggatattggatggtttcatcaaacacagaaagtgaacccatttttcttctatagctgtta |
8556394 |
T |
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| Q |
319 |
ttgttaagagaagaagagtaatgagatttgaataatgtgttggtggtaaataaacgaggaagaaagtttgggtatctg |
396 |
Q |
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| T |
8556393 |
ttgttaagagaagaagagtaatgagatttgaataatgtgttggtggtaaataaacgaggaagaaagtttgggtatctg |
8556316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 19 - 190
Target Start/End: Complemental strand, 8552359 - 8552188
Alignment:
| Q |
19 |
tagtgattaacacctcttttgaaaggagtgctataacgaggatgatcaaacacctttttgattgtttcaccaagtttggttctacaatcacatgtcttca |
118 |
Q |
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||||||||| |||||||||||||||||| | ||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||| |
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| T |
8552359 |
tagtgattagcacctcttttgaaaggagcggtataacgaggatgatcaaacaactttttgatagtttcaccaagtttggctctacaatcacatgtcttca |
8552260 |
T |
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| Q |
119 |
gcactgaatcagtcaacacaacctgtttctgtacaaagtctttgacttcttcagcatcaggattttcaagcc |
190 |
Q |
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|||||||| ||||||||||||||||| || || || |||||||||||||| || |||||||||||||||| |
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| T |
8552259 |
atactgaatctgtcaacacaacctgtttttgcacgaactctttgacttcttctgcgtcaggattttcaagcc |
8552188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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