View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_1 (Length: 558)
Name: NF3881_low_1
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 500; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 18 - 545
Target Start/End: Original strand, 10995274 - 10995801
Alignment:
| Q |
18 |
atgatgagaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttttgcaaaatctttatggaaacattccaa |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995274 |
atgatgagaatgagaaatcttgtgtttggcatgccagggattttgctgatggtgaacttaaggatgagctttttgcaaaatctttatggaaacattccaa |
10995373 |
T |
|
| Q |
118 |
gaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagcttctgattattcgaatgacaatctgcctctgccatccattcgagggg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995374 |
gaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagtagcttctgattattcgaatgacaatctgcctctgccatccattcgagggg |
10995473 |
T |
|
| Q |
218 |
aggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttatgcggtcaattggttttaaacaagggtgataa |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
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| T |
10995474 |
aggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttacgtggtcaattggttttaaacaagggtgataa |
10995573 |
T |
|
| Q |
318 |
accttacatgaaaaaggatctagaaatgaaaatctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttg |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995574 |
accttacatgaaaaaggatctagaaatgaaaatctttggaatattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttg |
10995673 |
T |
|
| Q |
418 |
cctccgaggatgatttacgattggtttgggcgatgggtacggtgaatttgaaacctggacttttacggttgttcgaatggactaaagacttcagtatcta |
517 |
Q |
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||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10995674 |
cctccgaggatgatttacgatcggtttgggcgttgggtacggtgaatttgaaacctggacttttacggttgttcgaatggactaaagacttcagtatcta |
10995773 |
T |
|
| Q |
518 |
tacgcaacgtaacactcacgcacaggtt |
545 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
10995774 |
tacgcaacgtaacactcacgcacaggtt |
10995801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 212 - 541
Target Start/End: Complemental strand, 14243633 - 14243297
Alignment:
| Q |
212 |
gaggggaggttctaagcattaagatctcacagacagtctatgagaaaggattggatgcttgcaagcggaatttatgcggtcaattggttttaaacaaggg |
311 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||||| |||||| |||||||| |||||||| |
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| T |
14243633 |
gaggggaggttctaagcattaagatctcgcagacagtgtatgagaaaggattggttgtttgcaagcggaatttacgcggtcgtttggttttgaacaaggg |
14243534 |
T |
|
| Q |
312 |
tgataaaccttacatgaaaaaggatctagaaatgaaaat-------ctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttat |
404 |
Q |
| |
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||||||||||||||||||||| ||||||||| ||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
14243533 |
tgataaaccttacatgaaaaatgatctagaactgaaacttcagaagctttggaagattacaggcgcgtggtccttgtgttctttaggaaggggattttat |
14243434 |
T |
|
| Q |
405 |
gaattctcatttgcctccgaggatgatttacgattggtttgggcgatgggtacggtgaatttgaaacctggacttttacggttgttcgaatggactaaag |
504 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
14243433 |
gaattctcatttgcctccgaggatgatttacgatcggtttgggcgatgggtacggtgaatttgaaacctggactgttgcggttgttcgaatggactaaag |
14243334 |
T |
|
| Q |
505 |
acttcagtatctatacgcaacgtaacactcacgcaca |
541 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||| |
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| T |
14243333 |
acttcagtatctatacgcaatgtaacactcacgcaca |
14243297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 351 - 475
Target Start/End: Original strand, 8478272 - 8478396
Alignment:
| Q |
351 |
ctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgcctccgaggatgatttacgattggtttgggcga |
450 |
Q |
| |
|
|||||||||| |||||||||||||| | | ||||||||| ||||| | ||||||||| | |||||||||||||| |||||||||| ||||||||||| |
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| T |
8478272 |
ctttggaagacatcaggcgcgtggtcccttctttctttaggtaggggttattatgaattttattttgcctccgaggaagatttacgatcggtttgggcga |
8478371 |
T |
|
| Q |
451 |
tgggtacggtgaatttgaaacctgg |
475 |
Q |
| |
|
|||| ||||| |||||||||||||| |
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| T |
8478372 |
tgggaacggtaaatttgaaacctgg |
8478396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 14248232 - 14248190
Alignment:
| Q |
174 |
tgattattcgaatgacaatctgcctctgccatccattcgaggg |
216 |
Q |
| |
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||||| || |||||||||||||||||||||||| ||||||||| |
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| T |
14248232 |
tgattctttgaatgacaatctgcctctgccatctattcgaggg |
14248190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 44027045 - 44027126
Alignment:
| Q |
90 |
ttgcaaaatctttatggaaacattccaagaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagct |
171 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44027045 |
ttgcaaaagctttatggaaacattccaagaagttgccgagtcccagaagcaagtggatgaccaggatgcatctgcagcagct |
44027126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 44025458 - 44025523
Alignment:
| Q |
25 |
gaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttt |
90 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44025458 |
gaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaacttaaggatgagctttt |
44025523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 351 - 497
Target Start/End: Complemental strand, 19937911 - 19937765
Alignment:
| Q |
351 |
ctttggaagattacaggcgcgtggtccttgcgttctttaggaaggggattttatgaattctcatttgcctccgaggatgatttacgattggtttgggcga |
450 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||||| ||||| | ||||||||| | |||||||||||||| |||||||||| ||||||||||| |
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| T |
19937911 |
ctttggaagacatcaggcgcgtggtccctgctttctttaggtaggggttattatgaattttattttgcctccgaggaagatttacgatcggtttgggcga |
19937812 |
T |
|
| Q |
451 |
tgggtacggtgaatttgaaacctggacttttacggttgttcgaatgg |
497 |
Q |
| |
|
|||| ||||| |||||||||||||| | ||| ||||||| |||||| |
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|
| T |
19937811 |
tgggaacggtaaatttgaaacctggtttgttaaggttgtttgaatgg |
19937765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 541
Target Start/End: Complemental strand, 22982201 - 22982053
Alignment:
| Q |
393 |
aggggattttatgaattctcatttgcctccgaggatgatttacgattggtttgggcgatgggtacggtgaatttgaaacctggacttttacggttgttcg |
492 |
Q |
| |
|
||||| || |||||||||| |||||||| ||||||||| | || |||| |||| ||||| ||||| |||||||| || ||| || | || ||||| | |
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|
| T |
22982201 |
aggggtttctatgaattcttttttgcctctgaggatgatatgcgcatggtatgggttatggggacggtcaatttgaagcccggagttctccgattgtttg |
22982102 |
T |
|
| Q |
493 |
aatggactaaagacttcagtatctatacgcaacgtaacactcacgcaca |
541 |
Q |
| |
|
||||||| |||||||||| ||| | | |||||||||||||| ||||| |
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|
| T |
22982101 |
aatggaccaaagacttcaatatgcacaaacaacgtaacactcatgcaca |
22982053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 14707099 - 14707051
Alignment:
| Q |
25 |
gaatgagaaatcttgtgtttggcatgctagggattttgctgatggtgaa |
73 |
Q |
| |
|
|||||||||||||||||||||||| || | ||| ||||||||||||||| |
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|
| T |
14707099 |
gaatgagaaatcttgtgtttggcacgcgaaggactttgctgatggtgaa |
14707051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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