View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_10 (Length: 376)
Name: NF3881_low_10
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 341; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 16 - 360
Target Start/End: Complemental strand, 30672220 - 30671876
Alignment:
| Q |
16 |
accatgccttataggatgagttcctctttgttccacaacgcagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttggtattaatc |
115 |
Q |
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| T |
30672220 |
accatgccttataggatgagttcctctttgttccacaacccagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttggtattaatc |
30672121 |
T |
|
| Q |
116 |
atgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatc |
215 |
Q |
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| T |
30672120 |
atgattttctttcctttgatatggttgatttctcatcgagttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatc |
30672021 |
T |
|
| Q |
216 |
tgaagcaaaagaagtgttgcagaataataataagatgaatcaaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcagaaata |
315 |
Q |
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| T |
30672020 |
tgaagcaaaagaagtgttgcagaataataataagatgaatcaaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcagaaata |
30671921 |
T |
|
| Q |
316 |
agagacacaacaaggggtggtaaaagggtttggcttggaacattt |
360 |
Q |
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| T |
30671920 |
agagacacaacaaggggtggtaaaagggtttggcttggaacattt |
30671876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 38 - 360
Target Start/End: Complemental strand, 30690093 - 30689771
Alignment:
| Q |
38 |
cctctttgttccacaacgcagatatggaaatgctgcaaagcccttctgaaatttcctttgaatcatttggtattaatcatgattttctttcctttgatat |
137 |
Q |
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| T |
30690093 |
cctctttgttccacaacccagatatggaaatgcagcaaggcccttcagaaatttcctttgaattatttgatattaatcatgattttctttcctttgatat |
30689994 |
T |
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| Q |
138 |
ggttgatttctcatcgagttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcag |
237 |
Q |
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| T |
30689993 |
ggttgatttctcatcgagttcgcagacaccaattaccaaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaacgaagtgttgcag |
30689894 |
T |
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| Q |
238 |
aataataataagatgaatcaaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggta |
337 |
Q |
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| T |
30689893 |
aataatactaagatggatcaaaaatcatcatatataggtgtaagaaaaagaccttggggaaagtatgcagcagagatcagagacacaacaagaggaggaa |
30689794 |
T |
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| Q |
338 |
aaagggtttggcttggaacattt |
360 |
Q |
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| T |
30689793 |
gaagggtttggcttggaacattt |
30689771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 56 - 360
Target Start/End: Complemental strand, 30710835 - 30710540
Alignment:
| Q |
56 |
cagatatggaaatgctgcaa---agcccttctgaaatttcctttgaatcatttggtattaatcatgattttctttcctttgatatggttgatttctcatc |
152 |
Q |
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|||||||||||||||||||| |||||||| |||||| |||| |||||||| |||||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
30710835 |
cagatatggaaatgctgcaacaaagcccttcggaaattcccttcgaatcattaggtatt---catgattgtcttacctttgatatggttgatttctcatc |
30710739 |
T |
|
| Q |
153 |
gagttcgcagacaccagttaccgaaaacgagccaaaacaattgatgttgaagtcatcatcatctgaagcaaaagaagtgttgcagaataataataagatg |
252 |
Q |
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||||| ||||||| | ||| |||||||||||||||||||| |||||||||| |||||||||| ||| |||| ||||||| | | ||||||| |
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| T |
30710738 |
gagtttgcagacaataattaacgaaaacgagccaaaacaatcaatgttgaagt------catctgaagctaaacaagtaatgcagaacatttataagatt |
30710645 |
T |
|
| Q |
253 |
aatcaaaagtcatcattaataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggtaaaagggtttggcttg |
352 |
Q |
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| T |
30710644 |
gatcaaaagtcat-at--ataggtgttaggaaaagacgttggggaaaatatgctgcagaaatcagagatacaacaagaggaggaagaagggtttggctag |
30710548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 30656804 - 30656715
Alignment:
| Q |
271 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggtaaaagggtttggcttggaacattt |
360 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| | ||||||||| |
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| T |
30656804 |
ataggtgtgaggaaaagaccttgggggaaatatgctgcagaaataagggacacaacaaggggtggcaaaagggtttggttaggaacattt |
30656715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 30718903 - 30718814
Alignment:
| Q |
271 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggtaaaagggtttggcttggaacattt |
360 |
Q |
| |
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|||||||| || || |||||||||||||||| ||||||||| || ||||| |||||||| || || | |||||||||||||||||||||| |
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| T |
30718903 |
ataggtgtgaggaagagaccttgggggaaatttgctgcagagattagagatacaacaagaggaggaagaagggtttggcttggaacattt |
30718814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 360
Target Start/End: Complemental strand, 30698746 - 30698657
Alignment:
| Q |
271 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggtaaaagggtttggcttggaacattt |
360 |
Q |
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|||||||| || || |||||||||||||||| ||||||||| || ||||| |||||||| || || | ||| |||||||| ||||||||| |
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| T |
30698746 |
ataggtgtgaggaagagaccttgggggaaatttgctgcagagatcagagatacaacaagaggaggaagaagagtttggctaggaacattt |
30698657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 271 - 351
Target Start/End: Original strand, 15815137 - 15815217
Alignment:
| Q |
271 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaaggggtggtaaaagggtttggctt |
351 |
Q |
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|||||||| || || |||||||||||||||| |||||||||||| ||||| ||| |||| || || | ||||||||||||| |
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| T |
15815137 |
ataggtgtgaggaagagaccttgggggaaatttgctgcagaaatcagagatacagcaagaggaggaagaagggtttggctt |
15815217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 329
Target Start/End: Original strand, 56539097 - 56539155
Alignment:
| Q |
271 |
ataggtgtaagaaaaagaccttgggggaaatatgctgcagaaataagagacacaacaag |
329 |
Q |
| |
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|||||||| |||||||| | |||||| |||||||| ||||| || |||||||||||||| |
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| T |
56539097 |
ataggtgtgagaaaaagtctttggggaaaatatgcagcagagatcagagacacaacaag |
56539155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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