View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_11 (Length: 366)
Name: NF3881_low_11
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 49132432 - 49132091
Alignment:
| Q |
17 |
atatacagggacctgttacannnnnnngctatgtattgttaaaatttgaaatattatcatcaagaagaagcaacatgaggcctcatcttaaactttctaa |
116 |
Q |
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| T |
49132432 |
atatacagggacctgttacatttttttgctatgtattgttaaaatttgaaatattatcatcaagaagaagcaacatgaggcctcatcttaaactttctaa |
49132333 |
T |
|
| Q |
117 |
tagtttataattaccacatatgaaataactccaattccatatcctgtgaaaaatcttcctatatcaagtgagtaaggatcctgcattaaaaagaataaca |
216 |
Q |
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| T |
49132332 |
gagtttataattaccacatatgaaataactccaattccatatcctgtgaaaaatcttcctatatcaagtgagtaaggatcctgcattaaaaagaataaca |
49132233 |
T |
|
| Q |
217 |
caagtgagtaatgtaataattcttttgcattttgtaaaattcnnnnnnncttcggtaaatattgtgtagaagatatacacacctttgaaaagaagacagc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49132232 |
caagtgagtaatgtaataattcttttgcattttgtaaaattctttttttcttcggtaaatattgtgtagaagatatacacacctttgaaaagaagacagc |
49132133 |
T |
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| Q |
317 |
caaccatcctgttatgcagaatcctgttgacaatctcattgc |
358 |
Q |
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| T |
49132132 |
cagccatcctgttatgcagaatcctgttgacaatctcattgc |
49132091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 6925533 - 6925465
Alignment:
| Q |
124 |
taattaccacatatgaaataactccaattccatatcctgtgaaaaatcttcctatatcaagtgagtaag |
192 |
Q |
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| T |
6925533 |
taattaccacataagagataactccaattccatatcctgtgaaaaaccttcccaagtcaagtgtgtaag |
6925465 |
T |
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