View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_13 (Length: 354)
Name: NF3881_low_13
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 49131850 - 49131526
Alignment:
| Q |
14 |
ctaacctcagagatagatagattaagatctgccctgatagctgcttgaatgggtgatgaatatcccacctgccaaaataatagctctcagctaaaaatgc |
113 |
Q |
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| T |
49131850 |
ctaacctcagagatagatagattaagatctgccctgatagctgcttgagtgggtgatgaatatcccacctgccaaaataatagctttcagctaaaaatgc |
49131751 |
T |
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| Q |
114 |
accatattataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcagaaccattcca |
213 |
Q |
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| T |
49131750 |
accatattataattttaagaaaattcaaaagaaacttacacaagttccaaatgaaaaagaaccgcaaacagcaacaaatgtgctgagcagaaccattcca |
49131651 |
T |
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| Q |
214 |
atggatccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaatctctatgtg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49131650 |
atggatccattttcagcccttttattagattcaatatcatgatagtcaacagtagcatcctttccatgttgaatgaagggctcttgtaaatctctatgtg |
49131551 |
T |
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| Q |
314 |
tattttcatgtccattctcaacatc |
338 |
Q |
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| T |
49131550 |
tattttcatgtccactctcaacatc |
49131526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 147 - 227
Target Start/End: Complemental strand, 6922589 - 6922509
Alignment:
| Q |
147 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctgagcagaaccattccaatggatccattttc |
227 |
Q |
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| T |
6922589 |
acttacacaagttccaaatgaaaaagaaccacaaacagcaacaaatgtgctaagcagaaccattccaatggatccattttc |
6922509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 28 - 84
Target Start/End: Complemental strand, 6923065 - 6923009
Alignment:
| Q |
28 |
agatagattaagatctgccctgatagctgcttgaatgggtgatgaatatcccacctg |
84 |
Q |
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||||||||||||||| ||||||||||| |||||| |||||| |||||| |||||||| |
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| T |
6923065 |
agatagattaagatcagccctgatagccgcttgagtgggtgctgaataacccacctg |
6923009 |
T |
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