View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_15 (Length: 338)
Name: NF3881_low_15
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 33723449 - 33723121
Alignment:
| Q |
1 |
aactaaaacgctttccaaagatnnnnnnnttgtgtgctccaagataaattataaggtaatataatattgatgatttagttcaaaatagtctacttgacaa |
100 |
Q |
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| T |
33723449 |
aactaaaacgctttccaaagataaaaaatttgtgtagtccaagataaattataaggtaatataatattgatgatttagttcaaaatagtctacttgacaa |
33723350 |
T |
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| Q |
101 |
aatgatgagtttgttagaaaaattgtttttggagaagatggtgcaacacttgaacaatgaagattgcactttagaatactagagtgtgtgtttctacaac |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
33723349 |
aatgatgagtttgttagaaaaattgttgttggagaagatggtgcaacacttgaacaatgaagattgcactttagaataccagagtgcgtgtttctacaac |
33723250 |
T |
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| Q |
201 |
atttaggttctcagaaactcattttttcaaaaatccatattcatactccaacattag--------tataatcatagtcgacataagcgacgagaataact |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||| || || ||||||||| |
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| T |
33723249 |
atttaggttctcagaaactcattttttcaaaaatccatattcatactccaatattagtaagcttctataatcatggtcgacataggcaactagaataact |
33723150 |
T |
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| Q |
293 |
cgaagcgcttacgaatggatgcccgtgat |
321 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
33723149 |
ggaagcgcttacaaatggatgcccgtgat |
33723121 |
T |
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