View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3881_low_16 (Length: 310)

Name: NF3881_low_16
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3881_low_16
NF3881_low_16
[»] chr7 (8 HSPs)
chr7 (111-310)||(21383630-21383830)
chr7 (17-124)||(21383857-21383965)
chr7 (137-299)||(2392896-2393068)
chr7 (136-226)||(6629532-6629623)
chr7 (217-310)||(5299104-5299198)
chr7 (250-310)||(3290792-3290852)
chr7 (250-310)||(23174988-23175049)
chr7 (259-310)||(30226084-30226136)
[»] chr4 (10 HSPs)
chr4 (120-310)||(19564694-19564886)
chr4 (119-306)||(11865226-11865422)
chr4 (231-299)||(24608677-24608746)
chr4 (230-306)||(11289450-11289526)
chr4 (220-310)||(15841593-15841683)
chr4 (261-310)||(13875975-13876024)
chr4 (250-310)||(21478098-21478158)
chr4 (250-310)||(23541234-23541294)
chr4 (250-310)||(25354744-25354804)
chr4 (248-288)||(12607270-12607310)
[»] chr6 (11 HSPs)
chr6 (136-310)||(1103418-1103600)
chr6 (128-244)||(11189437-11189554)
chr6 (234-310)||(3904774-3904850)
chr6 (181-310)||(26895521-26895650)
chr6 (170-310)||(13553259-13553402)
chr6 (231-310)||(19215925-19216003)
chr6 (259-310)||(20003136-20003187)
chr6 (250-310)||(15038338-15038398)
chr6 (250-310)||(16137690-16137750)
chr6 (250-310)||(20558292-20558352)
chr6 (230-309)||(16176564-16176644)
[»] chr1 (3 HSPs)
chr1 (136-310)||(4650320-4650495)
chr1 (137-310)||(49086699-49086874)
chr1 (149-213)||(13798525-13798589)
[»] chr2 (5 HSPs)
chr2 (116-310)||(31067593-31067788)
chr2 (116-253)||(8941154-8941291)
chr2 (219-310)||(28645773-28645865)
chr2 (231-310)||(25867143-25867223)
chr2 (250-310)||(18765666-18765726)
[»] chr3 (4 HSPs)
chr3 (220-310)||(10082381-10082472)
chr3 (220-310)||(10189306-10189397)
chr3 (149-213)||(42243669-42243733)
chr3 (250-310)||(20748272-20748331)
[»] chr8 (2 HSPs)
chr8 (149-213)||(14155818-14155882)
chr8 (250-306)||(33466272-33466328)
[»] scaffold0070 (1 HSPs)
scaffold0070 (149-211)||(3543-3605)
[»] chr5 (4 HSPs)
chr5 (249-310)||(11204711-11204772)
chr5 (250-310)||(7898023-7898083)
chr5 (250-310)||(17920892-17920952)
chr5 (250-310)||(26183343-26183403)
[»] scaffold0143 (1 HSPs)
scaffold0143 (250-306)||(36288-36344)
[»] scaffold0072 (1 HSPs)
scaffold0072 (246-310)||(18536-18600)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 1e-78; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 21383830 - 21383630
Alignment:
Q  111 aaatgtgaaattctagcacgcaggaaaaagatgtcgatcacgatgtc-aagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatata 209  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||| || ||||||||||||||||||||||||||||||||    
T  21383830 aaatgtgaagttctagcacgcaggaaagagatgtcgatcacgatgtctaagacacgcgtaatgttaaaaatgatgttaagacatcgtgacaacacatata 21383731  T
Q  210 acaaactaagataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaa 309  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||    
T  21383730 acaaattaagataaaggcaaaaagtaaaaggcacatgttatttgataacccagtttggtgcaacgtcacatacgtcttggactaccaagccaggaaggaa 21383631  T
Q  310 a 310  Q
    |    
T  21383630 a 21383630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 124
Target Start/End: Complemental strand, 21383965 - 21383857
Alignment:
Q  17 agtaaatggtgcataatgcatataattagttgccaattttcggttcccct-agtgagaagatgcattatcaagtattgattaaatttttgatttcaaatg 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||    
T  21383965 agtaaatggtgcataatgcatataattagttgccaattttcggttcccccgagtgagaagatgcattatcaagtattgattaaatttgtgatttcaaatg 21383866  T
Q  116 tgaaattct 124  Q
    |||| ||||    
T  21383865 tgaagttct 21383857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 299
Target Start/End: Complemental strand, 2393068 - 2392896
Alignment:
Q  137 aaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaac--------taaga-taaaggc 227  Q
    |||||||| || |||||||||| |||| ||   |||||||||| || || ||||||| ||||||||||| |||||||||        ||| | |||||||    
T  2393068 aaagatgttgaacacgatgtcatgacaagcgagatgtcaagaaagaagtcaagacattgtgacaacacaaataacaaacaacaactttaataataaaggc 2392969  T
Q  228 aggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctg-gggctaccaagc 299  Q
    ||||||||||| ||| | ||| |||| |||||||||| ||||||||||||| ||||| || ||||||||||||    
T  2392968 aggaagtaaaatgcataagttgtttgttaatccagttcggtgcaacgtcacctacgtttgagggctaccaagc 2392896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 226
Target Start/End: Complemental strand, 6629623 - 6629532
Alignment:
Q  136 aaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaact-aagataaagg 226  Q
    |||||| || || ||||||||||||||||||  ||||||||| |  |||| || |||||||||||||||| |||||||||| ||||||||||    
T  6629623 aaaagaagttgagcacgatgtcaagacacgcggaatgtcaagtacaatgtcaaaacatcgtgacaacacaaataacaaactaaagataaagg 6629532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 5299104 - 5299198
Alignment:
Q  217 aagataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||||||| || | ||||||| |||||| |||||| | ||| |||||||||| |||| || | ||  ||| ||||||||||||||||||||||||    
T  5299104 aagataaaagctgaaagtaaatggcacaagttattcgttaacccagtttggtacaacatcgcctagatctaggggctaccaagccaggaaggaaa 5299198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 3290852 - 3290792
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagccaggaaggaaa 310  Q
    |||| ||| ||||||||||||||||||||  || ||||||| ||||||||||||||||||||    
T  3290852 tttgttaacccagtttggtgcaacgtcaccaac-tctgggggctaccaagccaggaaggaaa 3290792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 23175049 - 23174988
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| |||||||| |||| ||| ||| ||||||||||||||||||||||||    
T  23175049 tttgttaacccagttcggtgcaacatcacctacatctaggggctaccaagccaggaaggaaa 23174988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 30226084 - 30226136
Alignment:
Q  259 ccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||||| ||||||||||||| ||| ||| |||||||||||| |||||||||||    
T  30226084 ccagttcggtgcaacgtcacctacatctgggggctaccaagtcaggaaggaaa 30226136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 120 - 310
Target Start/End: Original strand, 19564694 - 19564886
Alignment:
Q  120 attctagcacgcaggaaaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaact-aa 218  Q
    ||||| ||||| |||||| |||| | || |||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||| |||||||  | ||    
T  19564694 attctggcacgtaggaaagagattttgagcacgatgtcaagacacgcgtaatgtcaagaatgatgtcaagacatcgagacaacacaaataacaacttaaa 19564793  T
Q  219 gataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    ||||||||||| |||||||||||||  |||||||| ||| |||||||||||||||||||  || |||| | || |||||||||| ||||||||    
T  19564794 gataaaggcagaaagtaaaaggcacgggttatttgttaacccagtttggtgcaacgtcatctaagtctagaggttaccaagccaagaaggaaa 19564886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 119 - 306
Target Start/End: Complemental strand, 11865422 - 11865226
Alignment:
Q  119 aattctagcacgcaggaaaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacata-taacaaa--- 214  Q
    ||||||||||| ||| |||| ||||| |  ||| ||||||||||||||| ||||||||| | ||||| ||||||||||||||||||| | |||||||       
T  11865422 aattctagcacacagtaaaa-gatgttgggcacaatgtcaagacacgcagaatgtcaagtaagatgtcaagacatcgtgacaacacaaaataacaaataa 11865324  T
Q  215 ---ct--aagataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaag 306  Q
       ||  ||||||||||||  |||||||||||||| |||||||| ||| |||||| |||||||||||   ||||||| ||||||||||||||||||||    
T  11865323 caacttaaagataaaggcaaaaagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcttctacgtctgggggctaccaagccaggaag 11865226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 231 - 299
Target Start/End: Original strand, 24608677 - 24608746
Alignment:
Q  231 aagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagc 299  Q
    |||||||||||||| |||||||| ||| |||||| ||||||||||||| ||||||||||| |||||||||    
T  24608677 aagtaaaaggcacaagttatttgttaacccagttcggtgcaacgtcacctacgtctggggactaccaagc 24608746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 11289526 - 11289450
Alignment:
Q  230 gaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaag 306  Q
    ||||||||||||||||| | |||| ||| |||||| |||||||||||||  |||||||||| || ||||||||||||    
T  11289526 gaagtaaaaggcacatggtgtttgttaacccagttcggtgcaacgtcaccaacgtctggggttaacaagccaggaag 11289450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Original strand, 15841593 - 15841683
Alignment:
Q  220 ataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    |||||||||||||||||||| |||| || ||||| ||| ||||||  |||||| ||||| |||||||||| | |  ||| |||||||||||    
T  15841593 ataaaggcaggaagtaaaagacacaagtaatttgttaacccagttcagtgcaatgtcacctacgtctgggtcaaataagtcaggaaggaaa 15841683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 310
Target Start/End: Original strand, 13875975 - 13876024
Alignment:
Q  261 agtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    ||||||||||||| | || ||| | |||||||||||||||||||||||||    
T  13875975 agtttggtgcaacttaacctacatatggggctaccaagccaggaaggaaa 13876024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 21478098 - 21478158
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  21478098 tttgttaacccagttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaa 21478158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 23541234 - 23541294
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  23541234 tttgttaacccagttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaa 23541294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 25354804 - 25354744
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  25354804 tttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaa 25354744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 288
Target Start/End: Original strand, 12607270 - 12607310
Alignment:
Q  248 tatttgataatccagtttggtgcaacgtcacatacgtctgg 288  Q
    ||||||||||||||||| ||||||||||||| ||| |||||    
T  12607270 tatttgataatccagttcggtgcaacgtcacctacatctgg 12607310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 1103600 - 1103418
Alignment:
Q  136 aaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaa---ctaa-----gataaaggc 227  Q
    |||||||||  | ||||||||||||||||||| |||||| || |  |||| ||||||||||||||||||| ||||||||   ||||     |||||| ||    
T  1103600 aaaagatgttaagcacgatgtcaagacacgcacaatgtcgagcacaatgtcaagacatcgtgacaacacaaataacaaataactaatagtagataaaagc 1103501  T
Q  228 aggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
     | |||||||||||||| |||||||  ||| |||||| ||||||||| ||| |||||||||||||||||||||||||| ||||    
T  1103500 tgaaagtaaaaggcacaagttattttttaacccagttcggtgcaacgccacttacgtctggggctaccaagccaggaaagaaa 1103418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 128 - 244
Target Start/End: Complemental strand, 11189554 - 11189437
Alignment:
Q  128 acgcaggaaaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaact-aagataaagg 226  Q
    ||||| |||| ||||||| | |||||||||||||||    ||||||||||||||||||  |||||||||||||||||| |||||||||| |||||||||     
T  11189554 acgcaagaaagagatgtctaacacgatgtcaagacatttgtaatgtcaagaatgatgtcgagacatcgtgacaacacacataacaaactaaagataaaga 11189455  T
Q  227 caggaagtaaaaggcaca 244  Q
    ||| ||||||||| ||||    
T  11189454 cagaaagtaaaagacaca 11189437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 310
Target Start/End: Complemental strand, 3904850 - 3904774
Alignment:
Q  234 taaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    ||||||||||| | |||||| ||| | |||| |||| |||||| | ||||| |||||||||||||||||||||||||    
T  3904850 taaaaggcacaagatatttgttaacctagttcggtgaaacgtcccctacgtttggggctaccaagccaggaaggaaa 3904774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 26895521 - 26895650
Alignment:
Q  181 gatgttaagacatcgtgacaacacatataacaaactaagataaaggcaggaagtaaaagg-cacatgttatttgataatccagtttggtgcaacgtcaca 279  Q
    ||||| ||||| |||||| ||||||  |||||||| || | |||||||||||  |||||| |||| | | |||| |||  |||||||||||||| ||||     
T  26895521 gatgtcaagacctcgtgataacacaattaacaaac-aataaaaaggcaggaaaaaaaaggacacaaggtgtttgttaactcagtttggtgcaacttcacc 26895619  T
Q  280 tacgtctggggctaccaagccaggaaggaaa 310  Q
    ||| ||||||| ||||||||||| |||||||    
T  26895620 tacatctggggttaccaagccagaaaggaaa 26895650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 310
Target Start/End: Original strand, 13553259 - 13553402
Alignment:
Q  170 atgtcaagaatgatgttaagacatcgtgacaacacatataacaaacta--agataaaggcaggaagtaaaaggcacatgttatttgataatccagtttgg 267  Q
    |||||||| | ||||| || |||| ||||||||||| ||| ||||  |  || ||||| ||| | |||||||||||  |||||||| ||  |||||| ||    
T  13553259 atgtcaagtaagatgtcaaaacattgtgacaacacaaatatcaaataacaagttaaagacagaaggtaaaaggcacgagttatttgctatcccagttggg 13553358  T
Q  268 tgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||||| |||| ||||| | |||||||||| |||||||||||||    
T  13553359 tgcaacatcacctacgtttgggggctaccatgccaggaaggaaa 13553402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 19215925 - 19216003
Alignment:
Q  231 aagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    |||||||||||||||    |||| ||| |||||| ||||||||||||| ||| ||| ||| |||||||||||||||||||    
T  19215925 aagtaaaaggcacattgagtttgttaacccagttcggtgcaacgtcacctac-tctagggataccaagccaggaaggaaa 19216003  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 259 - 310
Target Start/End: Original strand, 20003136 - 20003187
Alignment:
Q  259 ccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    |||||| ||||||||||||| ||| |  ||||||||||||||||||||||||    
T  20003136 ccagttcggtgcaacgtcacctactttaggggctaccaagccaggaaggaaa 20003187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 15038338 - 15038398
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||||||||||||||||| ||| ||| |||||||||||| |||||||||||    
T  15038338 tttgttaacccagtttggtgcaacgtcacctac-tctgggggctaccaagtcaggaaggaaa 15038398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 16137750 - 16137690
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctg-gggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||||| ||||||||||| ||| |||| |||||||||||||||||||||||    
T  16137750 tttgttaacccagtttgatgcaacgtcacctac-tctgagggctaccaagccaggaaggaaa 16137690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 20558292 - 20558352
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| || |||||| ||||||||||||||||||||||    
T  20558292 tttgttaacccagttcggtgcaacgtcaccta-gtctggaggctaccaagccaggaaggaaa 20558352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 309
Target Start/End: Original strand, 16176564 - 16176644
Alignment:
Q  230 gaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaa 309  Q
    |||||||||| |||| | | |||| ||| ||||||| |||| || |||| ||||||||  |||||||||||||||||||||    
T  16176564 gaagtaaaagacacaaggtgtttgttaacccagtttagtgcgacttcacctacgtctgcaggctaccaagccaggaaggaa 16176644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 310
Target Start/End: Complemental strand, 4650495 - 4650320
Alignment:
Q  136 aaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaact-aagataaaggcaggaagt 234  Q
    ||||||||| || ||||||||||||||||||  |||||| || |  |||| ||||||||||||||||||| ||| |||||| |||||||||||   ||||    
T  4650495 aaaagatgttgagcacgatgtcaagacacgcgaaatgtcgagtacaatgtcaagacatcgtgacaacacaaatagcaaactaaagataaaggctaaaagt 4650396  T
Q  235 aaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    ||| | |||| |||||||| ||||| ||||  |||||||||||| ||| | | |||||| ||||| |||||||||||    
T  4650395 aaatgacacaagttatttgttaatctagttatgtgcaacgtcacctacatttaggggct-ccaagtcaggaaggaaa 4650320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 137 - 310
Target Start/End: Complemental strand, 49086874 - 49086699
Alignment:
Q  137 aaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaactaa-gataaaggcaggaagta 235  Q
    |||||||| || |||||||| | |||| ||  |||||| |||| ||||| ||||||||||| ||||| | |||||||  |||  |||||| ||| |||||    
T  49086874 aaagatgttgagcacgatgtaacgacaagcgaaatgtctagaaagatgtcaagacatcgtgtcaacagaaataacaacttaataataaagacagaaagta 49086775  T
Q  236 aaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||| |||| ||  |||| ||| |||||| ||||||||||||| ||| | | ||||||||||||||||||| ||||    
T  49086774 aaagacacaagtcgtttgttaacccagttcggtgcaacgtcacctacatgtgggggctaccaagccaggaaagaaa 49086699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 13798525 - 13798589
Alignment:
Q  149 cacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaa 213  Q
    ||||||||||||||| |  | |||||||||| ||||| |||||||||||| |||||| |||||||    
T  13798525 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 13798589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 310
Target Start/End: Complemental strand, 31067788 - 31067593
Alignment:
Q  116 tgaaattctagcacgcaggaaaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaac 215  Q
    ||||||||| |||||||| |||| ||||| || ||||||||||||||||    ||| || |  |  |||| || |||||||||||||| | ||||||| |    
T  31067788 tgaaattctggcacgcagtaaaa-gatgttgaacacgatgtcaagacactaggaatatcgaatacaatgtcaaaacatcgtgacaacataaataacaatc 31067690  T
Q  216 t-aagataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    | ||| |||| |||  ||||||| | |||| |||||||| ||| | |||||||||||||||||| ||||||| |||||||||||  |||||||||||    
T  31067689 ttaaggtaaatgcaaaaagtaaatgacacaagttatttgttaacctagtttggtgcaacgtcacctacgtctgggggctaccaattcaggaaggaaa 31067593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 8941154 - 8941291
Alignment:
Q  116 tgaaattctagcacgcaggaaaaagatgtcgatcacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaaac 215  Q
    |||||||||||||||||| |||| ||||  || |||||||||||||||||   |||||| || |  |||| ||||||| ||||||| ||| |||||||||    
T  8941154 tgaaattctagcacgcagtaaaa-gatgctgagcacgatgtcaagacacgaggaatgtcgagtacaatgtcaagacattgtgacaatacaaataacaaac 8941252  T
Q  216 t-aagataaaggcaggaagtaaaaggcacatgttatttg 253  Q
    | |||||||| || | |||||||  ||||| ||||||||    
T  8941253 taaagataaaagctgaaagtaaattgcacaagttatttg 8941291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 310
Target Start/End: Complemental strand, 28645865 - 28645773
Alignment:
Q  219 gataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgt-ctggggctaccaagccaggaaggaaa 310  Q
    ||||||||||| ||||||||||||||||||||||  ||| | ||||  |||||||||||| ||| | | |||| ||||||| |||||||||||    
T  28645865 gataaaggcagaaagtaaaaggcacatgttatttattaaccaagttctgtgcaacgtcacctacatccgggggataccaagtcaggaaggaaa 28645773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 310
Target Start/End: Original strand, 25867143 - 25867223
Alignment:
Q  231 aagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaaa 310  Q
    ||||||||| |||| |||||||  |||   |||||||||||||||||| ||| ||||| |||||||| |||||||||||||    
T  25867143 aagtaaaagacacaagttatttcttaacttagtttggtgcaacgtcacctacatctggaggctaccaggccaggaaggaaa 25867223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Original strand, 18765666 - 18765726
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  18765666 tttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaa 18765726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 10082472 - 10082381
Alignment:
Q  220 ataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    ||||| ||||||||||||| ||||| ||| |||| ||| |||||| ||||||||||||| ||| ||| ||||||||||||| ||||||||||    
T  10082472 ataaaagcaggaagtaaaatgcacaagttgtttgttaacccagttcggtgcaacgtcacctacatctaggggctaccaagctaggaaggaaa 10082381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 220 - 310
Target Start/End: Complemental strand, 10189397 - 10189306
Alignment:
Q  220 ataaaggcaggaagtaaaaggcacatgttatttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    ||||| ||||||||||||| ||||| ||| |||| ||| |||||| ||||||||||||| ||| | | ||||||||||||| ||||||||||    
T  10189397 ataaaagcaggaagtaaaatgcacaagttgtttgttaacccagttcggtgcaacgtcacctacatgtaggggctaccaagctaggaaggaaa 10189306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 42243669 - 42243733
Alignment:
Q  149 cacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaa 213  Q
    ||||||||||||||| |  | |||||||||| ||||| |||||||||||| |||||| |||||||    
T  42243669 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 42243733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 20748331 - 20748272
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| |||||||| |||| ||| | |||||||||||||||||||||||||    
T  20748331 tttgttaacccagttcggtgcaacatcacctactt-tggggctaccaagccaggaaggaaa 20748272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 14155818 - 14155882
Alignment:
Q  149 cacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataacaa 213  Q
    ||||||||||||||| |  | |||||||||| ||||| |||||||||||| |||||| |||||||    
T  14155818 cacgatgtcaagacaagtgtgatgtcaagaaagatgtcaagacatcgtgataacacaaataacaa 14155882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 33466328 - 33466272
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaag 306  Q
    |||| |||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||    
T  33466328 tttgttaatccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaag 33466272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 3543 - 3605
Alignment:
Q  149 cacgatgtcaagacacgcataatgtcaagaatgatgttaagacatcgtgacaacacatataac 211  Q
    ||||||||||||||||||  |||||| || |  |||| ||||||||||||||||||| |||||    
T  3543 cacgatgtcaagacacgcggaatgtccagcacaatgtcaagacatcgtgacaacacaaataac 3605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 310
Target Start/End: Original strand, 11204711 - 11204772
Alignment:
Q  249 atttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagccaggaaggaaa 310  Q
    ||||| ||| |||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  11204711 atttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaa 11204772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 7898083 - 7898023
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgg-ggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||| ||||||||||||||||||||||    
T  7898083 tttgttaacccagttcggtgcaacgtcacctac-tctggaggctaccaagccaggaaggaaa 7898023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 17920952 - 17920892
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||| ||||||||||||||||||||||||    
T  17920952 tttgttaacccagttcggtgcaacgtcacctac-tctaggggctaccaagccaggaaggaaa 17920892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 26183403 - 26183343
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtctgggg-ctaccaagccaggaaggaaa 310  Q
    |||| ||| |||||| ||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  26183403 tttgttaacccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaaggaaa 26183343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0143 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0143
Description:

Target: scaffold0143; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 36288 - 36344
Alignment:
Q  250 tttgataatccagtttggtgcaacgtcacatacgtct-ggggctaccaagccaggaag 306  Q
    |||| |||||||||| ||||||||||||| ||| ||| ||||||||||||||||||||    
T  36288 tttgttaatccagttcggtgcaacgtcacctac-tctgggggctaccaagccaggaag 36344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 18536 - 18600
Alignment:
Q  246 gttatttgataatccagtttggtgcaacgtcacatacgtctggggctaccaagccaggaaggaaa 310  Q
    |||||||| | | |||||| |||||||| |||| ||| | |||||||||||||||| ||||||||    
T  18536 gttatttgttgacccagttcggtgcaacttcacctacttttggggctaccaagccatgaaggaaa 18600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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