View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3881_low_19 (Length: 261)

Name: NF3881_low_19
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3881_low_19
NF3881_low_19
[»] chr2 (20 HSPs)
chr2 (52-107)||(12677570-12677625)
chr2 (180-251)||(12677889-12677960)
chr2 (52-98)||(7646251-7646297)
chr2 (52-95)||(35220113-35220156)
chr2 (52-95)||(43397393-43397436)
chr2 (52-93)||(7448032-7448073)
chr2 (52-92)||(11985504-11985544)
chr2 (52-100)||(27097679-27097727)
chr2 (52-92)||(31788241-31788281)
chr2 (52-99)||(36943398-36943445)
chr2 (52-94)||(4098886-4098928)
chr2 (52-89)||(1421459-1421496)
chr2 (52-100)||(4778530-4778578)
chr2 (57-96)||(12648203-12648242)
chr2 (53-92)||(29279845-29279884)
chr2 (52-86)||(9169531-9169565)
chr2 (53-95)||(19597661-19597703)
chr2 (52-81)||(7678152-7678181)
chr2 (61-90)||(36691653-36691682)
chr2 (52-80)||(18763265-18763293)
[»] chr8 (15 HSPs)
chr8 (52-99)||(31013843-31013890)
chr8 (52-98)||(10377468-10377514)
chr8 (52-99)||(8412621-8412668)
chr8 (52-95)||(27110736-27110779)
chr8 (52-91)||(45446083-45446122)
chr8 (52-99)||(40211578-40211625)
chr8 (53-95)||(8980971-8981013)
chr8 (52-90)||(25191338-25191376)
chr8 (52-90)||(37971074-37971112)
chr8 (52-89)||(17693885-17693922)
chr8 (53-81)||(15344094-15344122)
chr8 (53-81)||(15433159-15433187)
chr8 (53-81)||(15524463-15524491)
chr8 (52-88)||(20560016-20560052)
chr8 (52-88)||(20571578-20571614)
[»] chr6 (13 HSPs)
chr6 (52-98)||(3913847-3913893)
chr6 (54-95)||(12170268-12170309)
chr6 (52-92)||(33053442-33053482)
chr6 (52-95)||(9719666-9719709)
chr6 (52-95)||(9721784-9721827)
chr6 (54-93)||(32328859-32328898)
chr6 (52-89)||(9723653-9723690)
chr6 (52-95)||(68274-68317)
chr6 (180-219)||(33614503-33614542)
chr6 (56-98)||(29255720-29255762)
chr6 (52-89)||(605983-606020)
chr6 (55-88)||(14846340-14846373)
chr6 (55-95)||(8298216-8298256)
[»] chr3 (34 HSPs)
chr3 (52-98)||(45568718-45568764)
chr3 (52-101)||(40487091-40487140)
chr3 (52-96)||(47895922-47895966)
chr3 (53-102)||(31272082-31272131)
chr3 (52-95)||(20988029-20988072)
chr3 (52-95)||(36910929-36910972)
chr3 (52-93)||(48651009-48651050)
chr3 (52-92)||(9998241-9998281)
chr3 (52-92)||(10108013-10108053)
chr3 (52-92)||(10232845-10232885)
chr3 (52-92)||(21431400-21431440)
chr3 (52-92)||(35865207-35865247)
chr3 (52-92)||(43016630-43016670)
chr3 (52-100)||(43488871-43488919)
chr3 (52-95)||(6954970-6955013)
chr3 (52-95)||(33579640-33579683)
chr3 (52-95)||(40556483-40556526)
chr3 (53-92)||(50194558-50194597)
chr3 (52-93)||(47042326-47042367)
chr3 (52-100)||(9319830-9319878)
chr3 (52-84)||(9797801-9797833)
chr3 (52-92)||(10229249-10229289)
chr3 (52-88)||(38545614-38545650)
chr3 (56-91)||(7449179-7449214)
chr3 (56-91)||(7457321-7457356)
chr3 (57-92)||(12947559-12947594)
chr3 (52-95)||(32701270-32701313)
chr3 (53-99)||(953682-953728)
chr3 (60-98)||(20465248-20465286)
chr3 (53-98)||(53808137-53808183)
chr3 (186-219)||(980902-980935)
chr3 (53-98)||(629181-629228)
chr3 (52-95)||(23800185-23800229)
chr3 (52-100)||(36461705-36461753)
[»] chr5 (15 HSPs)
chr5 (52-99)||(11977211-11977258)
chr5 (52-95)||(24230061-24230104)
chr5 (52-95)||(38597569-38597612)
chr5 (52-95)||(7035999-7036042)
chr5 (52-93)||(25979931-25979972)
chr5 (52-100)||(13006995-13007043)
chr5 (53-100)||(8985212-8985259)
chr5 (52-95)||(14726742-14726785)
chr5 (52-90)||(7929975-7930013)
chr5 (52-100)||(6012412-6012460)
chr5 (56-92)||(15571260-15571296)
chr5 (52-92)||(26825203-26825243)
chr5 (52-92)||(4770912-4770952)
chr5 (52-92)||(9113999-9114039)
chr5 (63-91)||(11867493-11867521)
[»] chr1 (14 HSPs)
chr1 (52-95)||(35484652-35484695)
chr1 (52-95)||(34878545-34878588)
chr1 (52-98)||(26535172-26535218)
chr1 (52-98)||(31983952-31983998)
chr1 (54-99)||(12634938-12634983)
chr1 (52-95)||(7337937-7337980)
chr1 (57-93)||(27580405-27580441)
chr1 (52-95)||(1742056-1742099)
chr1 (52-99)||(21947891-21947938)
chr1 (54-97)||(28093501-28093544)
chr1 (53-95)||(44543047-44543090)
chr1 (52-99)||(45415330-45415377)
chr1 (59-92)||(47132693-47132726)
chr1 (52-92)||(3228048-3228088)
[»] chr4 (25 HSPs)
chr4 (52-94)||(13633907-13633949)
chr4 (52-96)||(19853785-19853829)
chr4 (52-89)||(2520575-2520612)
chr4 (52-95)||(22300637-22300680)
chr4 (52-95)||(22610976-22611019)
chr4 (52-91)||(26633944-26633983)
chr4 (52-99)||(56156827-56156874)
chr4 (54-100)||(51024737-51024783)
chr4 (52-89)||(10496140-10496177)
chr4 (52-93)||(53810822-53810863)
chr4 (53-97)||(9713691-9713735)
chr4 (52-92)||(35348101-35348141)
chr4 (52-92)||(48257723-48257763)
chr4 (52-87)||(9165317-9165352)
chr4 (53-88)||(9643176-9643211)
chr4 (52-91)||(21686514-21686553)
chr4 (52-95)||(45418321-45418364)
chr4 (52-98)||(24099345-24099391)
chr4 (52-86)||(26091187-26091221)
chr4 (53-99)||(37465331-37465377)
chr4 (54-100)||(51888492-51888538)
chr4 (52-97)||(5119128-5119173)
chr4 (52-85)||(29961203-29961236)
chr4 (52-92)||(4143028-4143068)
chr4 (52-92)||(32766308-32766348)
[»] scaffold0127 (1 HSPs)
scaffold0127 (52-101)||(15258-15307)
[»] chr7 (14 HSPs)
chr7 (52-98)||(40992953-40992999)
chr7 (59-99)||(9450418-9450458)
chr7 (52-99)||(8013739-8013786)
chr7 (53-95)||(4529853-4529895)
chr7 (52-89)||(19405028-19405065)
chr7 (52-89)||(37837732-37837769)
chr7 (53-97)||(25067858-25067902)
chr7 (52-88)||(42978389-42978425)
chr7 (52-88)||(45350466-45350502)
chr7 (52-91)||(13797205-13797244)
chr7 (52-99)||(41554397-41554444)
chr7 (52-94)||(39171866-39171908)
chr7 (52-101)||(39329067-39329116)
chr7 (52-88)||(47590095-47590131)
[»] scaffold0087 (1 HSPs)
scaffold0087 (52-101)||(25603-25652)
[»] scaffold0017 (1 HSPs)
scaffold0017 (52-93)||(33022-33063)
[»] scaffold0088 (1 HSPs)
scaffold0088 (52-100)||(50553-50601)
[»] scaffold0026 (1 HSPs)
scaffold0026 (52-100)||(72138-72186)
[»] scaffold0064 (1 HSPs)
scaffold0064 (53-98)||(19310-19355)
[»] scaffold0219 (1 HSPs)
scaffold0219 (52-92)||(15112-15152)
[»] scaffold0009 (1 HSPs)
scaffold0009 (53-86)||(58354-58387)
[»] scaffold0445 (1 HSPs)
scaffold0445 (52-92)||(1119-1159)


Alignment Details
Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 12677570 - 12677625
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaaagtatgg 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12677570 tttagagagaagttggagtttctctcactagaaaactagggccggctaaagtatgg 12677625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 180 - 251
Target Start/End: Original strand, 12677889 - 12677960
Alignment:
Q  180 ttaaatatgttcatatgaaataagtttttaaatagactaatagtcacatcagacctaaaaagcaagcctatg 251  Q
    ||||| || ||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  12677889 ttaaagatattcatatgaaataagtttttaaacagactaatagccacatcagacctaaaaagcaagtctatg 12677960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 7646297 - 7646251
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  7646297 tttagagagaagttggagtttctcccactagaaaactagggccgact 7646251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 35220156 - 35220113
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  35220156 tttagagagaggttggagtttctctcactagaaaactagggccg 35220113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 43397393 - 43397436
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  43397393 tttaaagagaagttggagtttctctcactagaaaactagggccg 43397436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 7448073 - 7448032
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  7448073 tttagagagaagttggagtttctcccactagaaaactagggc 7448032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 11985504 - 11985544
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  11985504 tttagagagaagttggagtttctctcattagaaaactaggg 11985544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 27097679 - 27097727
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||| ||||    
T  27097679 tttagagagaagttggagtttcttccactagaaaactagggccggctaa 27097727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 31788281 - 31788241
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||||||||||||||| |||||    
T  31788281 tttagagagaagttggagtttctctcactagaaaattaggg 31788241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 36943398 - 36943445
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||| || ||||||||||||||||||||||||||||||| ||||    
T  36943398 tttagagataaattggagtttctctcactagaaaactagggccaacta 36943445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 4098928 - 4098886
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggcc 94  Q
    |||||||||||||||||||||||| ||||| ||||||||||||    
T  4098928 tttagagagaagttggagtttctcccactaaaaaactagggcc 4098886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 1421496 - 1421459
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  1421496 tttagcgagaagttggagtttctctcactagaaaacta 1421459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 4778578 - 4778530
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||| ||||||||||||||||| ||||| ||||||||||||| ||||    
T  4778578 tttagaaagaagttggagtttctcccactaaaaaactagggccggctaa 4778530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 12648203 - 12648242
Alignment:
Q  57 agagaagttggagtttctctcactagaaaactagggccga 96  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  12648203 agagaagttggagtttctctcacttaaaaactagggccga 12648242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 29279845 - 29279884
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||||||| |||||| |||||    
T  29279845 ttagagagaagttggagtttctctcacaagaaaattaggg 29279884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 9169531 - 9169565
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaa 86  Q
    |||||||||||||||||||||||| ||||||||||    
T  9169531 tttagagagaagttggagtttctcccactagaaaa 9169565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 19597703 - 19597661
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||| |||||||||||||||||||||  ||||||||||||    
T  19597703 ttagagataagttggagtttctctcactaataaactagggccg 19597661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 7678152 - 7678181
Alignment:
Q  52 tttagagagaagttggagtttctctcacta 81  Q
    ||||||||||||||||||||||||||||||    
T  7678152 tttagagagaagttggagtttctctcacta 7678181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 36691682 - 36691653
Alignment:
Q  61 aagttggagtttctctcactagaaaactag 90  Q
    ||||||||||||||||||||||||||||||    
T  36691682 aagttggagtttctctcactagaaaactag 36691653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 80
Target Start/End: Complemental strand, 18763293 - 18763265
Alignment:
Q  52 tttagagagaagttggagtttctctcact 80  Q
    |||||||||||||||||||||||||||||    
T  18763293 tttagagagaagttggagtttctctcact 18763265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 31013843 - 31013890
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013843 tttagagagaagttggagtttctctcactagaaaactagggccgacta 31013890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 10377514 - 10377468
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  10377514 tttagagagaagttggagtttctcccactagaaaactagggccgact 10377468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 8412621 - 8412668
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||||    
T  8412621 tttagagagaagttagagtttctctcactagaaaactaggaccgacta 8412668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 27110736 - 27110779
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||||||| ||||    
T  27110736 tttagagagaagttggagtttctctcactagaaaactagcgccg 27110779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 45446083 - 45446122
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagg 91  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45446083 tttagagagaagttggagtttctctcactagaaaactagg 45446122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 40211578 - 40211625
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||| |||||| |||||||||||||||||||||||||| |||||||||    
T  40211578 tttaaagagaaattggagtttctctcactagaaaactaaggccgacta 40211625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 8981013 - 8980971
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||| ||||||| |||||    
T  8981013 ttagagagaagttggagtttctctcactaaaaaactacggccg 8980971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 90
Target Start/End: Original strand, 25191338 - 25191376
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactag 90  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  25191338 tttagagagaagttggagtttctctcactaaaaaactag 25191376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 37971112 - 37971074
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactag 90  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  37971112 tttagagagaagttggagtttctctcattagaaaactag 37971074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 17693885 - 17693922
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    |||||||||||||||||||||||||||||| |||||||    
T  17693885 tttagagagaagttggagtttctctcactaaaaaacta 17693922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 15344122 - 15344094
Alignment:
Q  53 ttagagagaagttggagtttctctcacta 81  Q
    |||||||||||||||||||||||||||||    
T  15344122 ttagagagaagttggagtttctctcacta 15344094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 15433187 - 15433159
Alignment:
Q  53 ttagagagaagttggagtttctctcacta 81  Q
    |||||||||||||||||||||||||||||    
T  15433187 ttagagagaagttggagtttctctcacta 15433159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 81
Target Start/End: Complemental strand, 15524491 - 15524463
Alignment:
Q  53 ttagagagaagttggagtttctctcacta 81  Q
    |||||||||||||||||||||||||||||    
T  15524491 ttagagagaagttggagtttctctcacta 15524463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 20560016 - 20560052
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  20560016 tttagagagaagttggtgtttctctccctagaaaact 20560052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 20571578 - 20571614
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    |||||||||||||||| ||||||||| ||||||||||    
T  20571578 tttagagagaagttggtgtttctctccctagaaaact 20571614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 3913847 - 3913893
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  3913847 tttagagagaagttggagtttctctcactagaaaactagggccgact 3913893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 12170309 - 12170268
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  12170309 tagagagaagttggagtttctctcactagaaaactagggccg 12170268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 33053442 - 33053482
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  33053442 tttagagagaagttggagtttctcccactagaaaactaggg 33053482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 9719666 - 9719709
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  9719666 tttagagagaagttggagtttctctcacaagaaaactatggccg 9719709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 9721784 - 9721827
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||| || |||||    
T  9721784 tttagagagaagttggagtttctctcactagaaaattatggccg 9721827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 32328859 - 32328898
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggc 93  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  32328859 tagagagaagttagagtttctctcactagaaaactagggc 32328898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 9723653 - 9723690
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  9723653 tttagagagaagttggagtttctttcactagaaaacta 9723690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 68274 - 68317
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||  |||| |||||||||||||    
T  68274 tttagagagaagttggagtttctcctactaaaaaactagggccg 68317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 180 - 219
Target Start/End: Complemental strand, 33614542 - 33614503
Alignment:
Q  180 ttaaatatgttcatatgaaataagtttttaaatagactaa 219  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  33614542 ttaaatatgtttatatgaaataggtttttaaatagactaa 33614503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Original strand, 29255720 - 29255762
Alignment:
Q  56 gagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    ||||||||||||| ||||||||||||||||  |||||||||||    
T  29255720 gagagaagttggaatttctctcactagaaagttagggccgact 29255762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 606020 - 605983
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    |||||||| ||||||||||||||| |||||||||||||    
T  606020 tttagagaaaagttggagtttctcccactagaaaacta 605983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 88
Target Start/End: Original strand, 14846340 - 14846373
Alignment:
Q  55 agagagaagttggagtttctctcactagaaaact 88  Q
    ||||||||||||||||||| ||||||||||||||    
T  14846340 agagagaagttggagtttcactcactagaaaact 14846373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 8298216 - 8298256
Alignment:
Q  55 agagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||| ||| |||| |||||||||||||    
T  8298216 agagagaagttggagtttttcttactaaaaaactagggccg 8298256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 45568718 - 45568764
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  45568718 tttagagagaagttggagtttctctcactagaaaactagggccgact 45568764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 40487140 - 40487091
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaaa 101  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  40487140 tttagagagaagttggagtttctctcactagaaaattagggccgactaaa 40487091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 47895966 - 47895922
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccga 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  47895966 tttagagagaagttggagtttctctcactagaaaactagggccga 47895922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 31272082 - 31272131
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgactaaag 102  Q
    |||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  31272082 ttagagagaagttggagtttctctcactagaaaattagggctgactaaag 31272131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 20988029 - 20988072
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  20988029 tttagagagaagttggagtttctctcactaaaaaactagggccg 20988072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 36910929 - 36910972
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  36910929 tttatagagaagttggagtttctctcactagaaaactagggccg 36910972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 48651009 - 48651050
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  48651009 tttagagagaagttggagtttctttcactagaaaactagggc 48651050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 9998281 - 9998241
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  9998281 tttagagagaagttggagtttctcccactagaaaactaggg 9998241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 10108053 - 10108013
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  10108053 tttagagagaagttggagtttctcccactagaaaactaggg 10108013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 10232885 - 10232845
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  10232885 tttagagagaagttggagtttctcccactagaaaactaggg 10232845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 21431440 - 21431400
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  21431440 tttagagagaagttggagtttctcccactagaaaactaggg 21431400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 35865207 - 35865247
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  35865207 tttagagagaagttgaagtttctctcactagaaaactaggg 35865247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 43016670 - 43016630
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  43016670 tttagagagaagttagagtttctctcactagaaaactaggg 43016630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 43488871 - 43488919
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    ||||||||||||||| |||||||||||||| ||||||||||||| ||||    
T  43488871 tttagagagaagttgaagtttctctcactaaaaaactagggccggctaa 43488919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 6954970 - 6955013
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||||||||  |||||||||||||||||||    
T  6954970 tttagagagaagttggagtttcttccactagaaaactagggccg 6955013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 33579683 - 33579640
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||| |||||||||||||||||||| |||||||    
T  33579683 tttagagagaagttgaagtttctctcactagaaaacaagggccg 33579640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 40556526 - 40556483
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  40556526 tttagaaagaagttggagtttctcccactagaaaactagggccg 40556483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 92
Target Start/End: Original strand, 50194558 - 50194597
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  50194558 ttagagagaagttggagtttctctcactaaaaaactaggg 50194597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 47042326 - 47042367
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    ||||||||||||||||||||||| ||||||||||| ||||||    
T  47042326 tttagagagaagttggagtttctttcactagaaaattagggc 47042367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 9319878 - 9319830
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||||||||||| ||||||||| ||||| ||||||||||||| ||||    
T  9319878 tttagagagaagttagagtttctcccactaaaaaactagggccggctaa 9319830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 9797801 - 9797833
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaa 84  Q
    |||||||||||||||||||||||||||||||||    
T  9797801 tttagagagaagttggagtttctctcactagaa 9797833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 10229289 - 10229249
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  10229289 tttagagagaaattggagtttctcccactagaaaactaggg 10229249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 38545650 - 38545614
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    ||||||||||||||| |||||||||||||||||||||    
T  38545650 tttagagagaagttgaagtttctctcactagaaaact 38545614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 7449179 - 7449214
Alignment:
Q  56 gagagaagttggagtttctctcactagaaaactagg 91  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7449179 gagagaagttggagtttctctcattagaaaactagg 7449214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 91
Target Start/End: Original strand, 7457321 - 7457356
Alignment:
Q  56 gagagaagttggagtttctctcactagaaaactagg 91  Q
    ||||||||||||||||||||||| ||||||||||||    
T  7457321 gagagaagttggagtttctctcattagaaaactagg 7457356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 92
Target Start/End: Original strand, 12947559 - 12947594
Alignment:
Q  57 agagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||||||||||| ||||    
T  12947559 agagaagttggagtttctctcactagaaaacgaggg 12947594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 32701313 - 32701270
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||| ||||||||||||||||||  |||||||||||||||||||    
T  32701313 tttaaagagaagttggagtttcttccactagaaaactagggccg 32701270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Original strand, 953682 - 953728
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    ||||||||||  ||||||||||||||||| |||||||| ||||||||    
T  953682 ttagagagaatgtggagtttctctcactataaaactagagccgacta 953728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 98
Target Start/End: Original strand, 20465248 - 20465286
Alignment:
Q  60 gaagttggagtttctctcactagaaaactagggccgact 98  Q
    ||||||| |||||||||||| ||||||||||||||||||    
T  20465248 gaagttgaagtttctctcacaagaaaactagggccgact 20465286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 53808137 - 53808183
Alignment:
Q  53 ttagagagaagttggagtttctctcact-agaaaactagggccgact 98  Q
    |||||||||||||||||||||||||||| | |||||||||| |||||    
T  53808137 ttagagagaagttggagtttctctcactaaaaaaactagggtcgact 53808183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 980935 - 980902
Alignment:
Q  186 atgttcatatgaaataagtttttaaatagactaa 219  Q
    ||||||||||||||||||||||||||||| ||||    
T  980935 atgttcatatgaaataagtttttaaataggctaa 980902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 629181 - 629228
Alignment:
Q  53 ttagagagaagttggagtttctctcact--agaaaactagggccgact 98  Q
    ||||||||||||| ||||||||||||||  | ||||||||||||||||    
T  629181 ttagagagaagttagagtttctctcactaaaaaaaactagggccgact 629228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 23800185 - 23800229
Alignment:
Q  52 tttagagagaagttgga-gtttctctcactagaaaactagggccg 95  Q
    ||||||||||| || || |||||||||||||||||||||||||||    
T  23800185 tttagagagaaatttgaagtttctctcactagaaaactagggccg 23800229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 36461705 - 36461753
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||||||||  || |||||||| ||||||||||||||||||| ||||    
T  36461705 tttagagagaatatgaagtttctcacactagaaaactagggccggctaa 36461753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 11977211 - 11977258
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  11977211 tttagagagaagttagagtttctctcactagaaaactagggccgacta 11977258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 24230061 - 24230104
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  24230061 tttagagagaagttggagtttctctcactagaaaactagggccg 24230104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 38597612 - 38597569
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  38597612 tttagagagaagttggagtttctctcactagaaaactagggccg 38597569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 7036042 - 7035999
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  7036042 tttagagagaagtttgagtttctctcactagaaaactagggccg 7035999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 25979972 - 25979931
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  25979972 tttagagagaagttggagtttcgctcactagaaaactagggc 25979931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 13007043 - 13006995
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  13007043 tttagagagaagttggagtttctcccactaaaaaactagggccggctaa 13006995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 100
Target Start/End: Original strand, 8985212 - 8985259
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    ||||||||||||||||||||||||||||| ||| ||||||||| ||||    
T  8985212 ttagagagaagttggagtttctctcactaaaaagctagggccggctaa 8985259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 14726742 - 14726785
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||  ||||||||||||||||||||||||||||    
T  14726742 tttagagagaagttaaagtttctctcactagaaaactagggccg 14726785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 90
Target Start/End: Complemental strand, 7930013 - 7929975
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactag 90  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  7930013 tttagagagaatttggagtttctctcactagaaaactag 7929975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 6012412 - 6012460
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||||||||||||||||||||| ||||| |||||| |||||| ||||    
T  6012412 tttagagagaagttggagtttctcccactaaaaaactggggccggctaa 6012460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Complemental strand, 15571296 - 15571260
Alignment:
Q  56 gagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||| ||||||||||||||||||||||||||    
T  15571296 gagagaagttagagtttctctcactagaaaactaggg 15571260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 26825243 - 26825203
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  26825243 tttagagagaaattggagtttctcccactagaaaactaggg 26825203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 4770952 - 4770912
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||| |||||||||||  |||||||||||||    
T  4770952 tttagagagaagttagagtttctctcggtagaaaactaggg 4770912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 9113999 - 9114039
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||||||||||| |||||||||  |||||||||||||||    
T  9113999 tttagagagaagttagagtttctcctactagaaaactaggg 9114039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 91
Target Start/End: Complemental strand, 11867521 - 11867493
Alignment:
Q  63 gttggagtttctctcactagaaaactagg 91  Q
    |||||||||||||||||||||||||||||    
T  11867521 gttggagtttctctcactagaaaactagg 11867493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 35484652 - 35484695
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  35484652 tttagagagaagttggagtttctctcactagaaaactagggccg 35484695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 34878545 - 34878588
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  34878545 tttaaagagaagttggagtttctctcactagaaaactagggccg 34878588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 26535218 - 26535172
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||    
T  26535218 tttagagagaagttagagtttctctcactagaaaactaaggccgact 26535172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 31983998 - 31983952
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||    
T  31983998 tttagagagaagttggagtttctctcactaaaaatctagggccgact 31983952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 12634983 - 12634938
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||    
T  12634983 tagagagaagtttgagtttctctcactaaaaaactagggccgacta 12634938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Original strand, 7337937 - 7337980
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||    
T  7337937 tttagagagaagttgaagtttctttcactagaaaactagggccg 7337980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 93
Target Start/End: Original strand, 27580405 - 27580441
Alignment:
Q  57 agagaagttggagtttctctcactagaaaactagggc 93  Q
    ||||||||||||||||||||||||| |||||||||||    
T  27580405 agagaagttggagtttctctcactacaaaactagggc 27580441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 1742099 - 1742056
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||| ||||||| ||||||||||||||||||||||| |||||    
T  1742099 tttagaaagaagtttgagtttctctcactagaaaactaaggccg 1742056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 21947891 - 21947938
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||| || ||| |||||||||||||||||||||| |||||||||    
T  21947891 tttagagaaaaattgaagtttctctcactagaaaactaaggccgacta 21947938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 97
Target Start/End: Complemental strand, 28093544 - 28093501
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggccgac 97  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||    
T  28093544 tagagagaaggtggagtttctctcactaaaaaactagggtcgac 28093501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 44543090 - 44543047
Alignment:
Q  53 ttagagagaagttggagtttctctcact-agaaaactagggccg 95  Q
    |||||||||||||||||||||||||||| | |||||||||||||    
T  44543090 ttagagagaagttggagtttctctcactaaaaaaactagggccg 44543047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 45415377 - 45415330
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||| |||||||||| |||||||||||||||||||||| || ||||||    
T  45415377 tttaaagagaagttgaagtttctctcactagaaaactaaggtcgacta 45415330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 92
Target Start/End: Complemental strand, 47132726 - 47132693
Alignment:
Q  59 agaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||||||||||| ||||||||||    
T  47132726 agaagttggagtttctctcactaaaaaactaggg 47132693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 3228088 - 3228048
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||| ||||||||||||||| ||| |||||||||||||||    
T  3228088 tttagggagaagttggagtttttctaactagaaaactaggg 3228048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Complemental strand, 13633949 - 13633907
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggcc 94  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13633949 tttagagagaagttggagtttctctcactagaaaactagggcc 13633907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 19853785 - 19853829
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccga 96  Q
    |||||||||||||||||||||||| ||||||||||||||||||||    
T  19853785 tttagagagaagttggagtttctcccactagaaaactagggccga 19853829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 2520612 - 2520575
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    ||||||||||||||||||||||||||||||||||||||    
T  2520612 tttagagagaagttggagtttctctcactagaaaacta 2520575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 22300680 - 22300637
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||||||||||| ||| |||||||||||||    
T  22300680 tttagagagaagttggagtttctctctctaaaaaactagggccg 22300637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 22611019 - 22610976
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    |||||||||||||||||||||||| ||||| |||||||||||||    
T  22611019 tttagagagaagttggagtttctcccactaaaaaactagggccg 22610976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 26633944 - 26633983
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagg 91  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  26633944 tttagagagaagttggagtttctctcactaaaaaactagg 26633983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 56156827 - 56156874
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    ||||||||||||||||||||||||||| || ||||||||| |||||||    
T  56156827 tttagagagaagttggagtttctctcaataaaaaactaggaccgacta 56156874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 51024737 - 51024783
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    ||||||||||||||||||||||||||| ||||| |||||||| ||||    
T  51024737 tagagagaagttggagtttctctcactggaaaattagggccggctaa 51024783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Complemental strand, 10496177 - 10496140
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10496177 tttagaaagaagttggagtttctctcactagaaaacta 10496140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 93
Target Start/End: Complemental strand, 53810863 - 53810822
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    |||||||||||| ||||||||||| |||||||||||||||||    
T  53810863 tttagagagaagctggagtttctcccactagaaaactagggc 53810822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 9713735 - 9713691
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgac 97  Q
    ||||||||||| | ||||||||||||||| |||||||||||||||    
T  9713735 ttagagagaaggtagagtttctctcactaaaaaactagggccgac 9713691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 35348141 - 35348101
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  35348141 tttaaagagaagttggagtttctttcactagaaaactaggg 35348101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 48257723 - 48257763
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  48257723 tttaaagagaagttggagtttttctcactagaaaactaggg 48257763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 87
Target Start/End: Original strand, 9165317 - 9165352
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaac 87  Q
    |||||||||||||||||||||||||||| |||||||    
T  9165317 tttagagagaagttggagtttctctcacaagaaaac 9165352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 53 - 88
Target Start/End: Complemental strand, 9643211 - 9643176
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaact 88  Q
    ||||||||||||||||||||||||||||| ||||||    
T  9643211 ttagagagaagttggagtttctctcactaaaaaact 9643176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 21686514 - 21686553
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagg 91  Q
    ||||||||||||||  ||||||||||||||||||||||||    
T  21686514 tttagagagaagttaaagtttctctcactagaaaactagg 21686553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 95
Target Start/End: Complemental strand, 45418364 - 45418321
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||||||| ||||| |||| |||||||||||||||||    
T  45418364 tttagagagaagttgaagtttttctcgctagaaaactagggccg 45418321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 24099345 - 24099391
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    ||||||||||| ||  ||||||| |||||||||||||||||||||||    
T  24099345 tttagagagaatttaaagtttctttcactagaaaactagggccgact 24099391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 86
Target Start/End: Original strand, 26091187 - 26091221
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaa 86  Q
    |||||||||||||||||||||||||||||| ||||    
T  26091187 tttagagagaagttggagtttctctcactaaaaaa 26091221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 37465377 - 37465331
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||||||||||||||| |||||||  |||||||| ||||||||    
T  37465377 ttagagagaagttggagtttgtctcactgaaaaactagagccgacta 37465331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 51888492 - 51888538
Alignment:
Q  54 tagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||| |||||| ||||||||||| || ||||||||||||||||||    
T  51888492 tagagaaaagttgaagtttctctcaataaaaaactagggccgactaa 51888538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 5119173 - 5119128
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgac 97  Q
    |||||| |||||||| | ||| ||||||||||||||||||||||||    
T  5119173 tttagaaagaagttgaaatttatctcactagaaaactagggccgac 5119128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 29961203 - 29961236
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaa 85  Q
    ||||||||||||||||||||||||||| ||||||    
T  29961203 tttagagagaagttggagtttctctcattagaaa 29961236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 4143028 - 4143068
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||| ||||||||||||||||||| ||||| ||||||||||    
T  4143028 tttatagagaagttggagtttctcccactaaaaaactaggg 4143068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 32766348 - 32766308
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    |||||| ||||||||||||||||  ||||||||||||||||    
T  32766348 tttagaaagaagttggagtttcttccactagaaaactaggg 32766308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 101
Target Start/End: Complemental strand, 15307 - 15258
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaaa 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  15307 tttagagagaagttgaagtttctctcactagaaaactagggccggctaaa 15258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 40992999 - 40992953
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  40992999 tttagagagaagttggagtttctcccactagaaaactagggcagact 40992953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 9450418 - 9450458
Alignment:
Q  59 agaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  9450418 agaagttggagtttctctcactagaaaattagggccgacta 9450458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 8013739 - 8013786
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    ||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  8013739 tttagagagaagttgaagtttctctcactaaaaaactagggctgacta 8013786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Complemental strand, 4529895 - 4529853
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccg 95  Q
    ||||||||||| || ||||||||||||||||||||||||||||    
T  4529895 ttagagagaaggtgaagtttctctcactagaaaactagggccg 4529853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 19405028 - 19405065
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    |||||||||||||||||||||||||||||| |||||||    
T  19405028 tttagagagaagttggagtttctctcactaaaaaacta 19405065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 89
Target Start/End: Original strand, 37837732 - 37837769
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaacta 89  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  37837732 tttagagagaagttggagtttctctcattagaaaacta 37837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 25067902 - 25067858
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgac 97  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||    
T  25067902 ttagtgagaaggtggagtttctctcactaaaaaactagggccgac 25067858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 42978425 - 42978389
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    |||||||||||||| ||||||||||||||||||||||    
T  42978425 tttagagagaagttagagtttctctcactagaaaact 42978389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 88
Target Start/End: Original strand, 45350466 - 45350502
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    ||||||||||||||| |||||||||||||||||||||    
T  45350466 tttagagagaagttgaagtttctctcactagaaaact 45350502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 13797205 - 13797244
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagg 91  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  13797205 tttaaagagaagttgaagtttctctcactagaaaactagg 13797244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 41554397 - 41554444
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgacta 99  Q
    |||| ||| ||||| ||||||||||||||| |||||||||||||||||    
T  41554397 tttaaagaaaagttagagtttctctcactaaaaaactagggccgacta 41554444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 39171866 - 39171908
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggcc 94  Q
    |||||||| | |||||||||| |||||||||||||||||||||    
T  39171866 tttagagatacgttggagtttatctcactagaaaactagggcc 39171908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 39329067 - 39329116
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaaa 101  Q
    |||||| | ||||| |||||||||||||||||||| |||||||| |||||    
T  39329067 tttagaaaaaagtttgagtttctctcactagaaaattagggccggctaaa 39329116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 47590131 - 47590095
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaact 88  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  47590131 tttagagagaagttggaatttctctcactaaaaaact 47590095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0087 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0087
Description:

Target: scaffold0087; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 25603 - 25652
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaaa 101  Q
    |||||||| |||||| |||||||||||||||||||||||||||| |||||    
T  25603 tttagagaaaagttgaagtttctctcactagaaaactagggccggctaaa 25652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 93
Target Start/End: Original strand, 33022 - 33063
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggc 93  Q
    |||||||||||||| |||||||||||||||||||||||||||    
T  33022 tttagagagaagttagagtttctctcactagaaaactagggc 33063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 50601 - 50553
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    |||||| ||||||||||||||||| ||||||||||||||||||| ||||    
T  50601 tttagaaagaagttggagtttctcccactagaaaactagggccggctaa 50553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 72138 - 72186
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactagggccgactaa 100  Q
    ||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  72138 tttagagagaagttgaagtttctcccactagaaaactagggccggctaa 72186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 19310 - 19355
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaactagggccgact 98  Q
    ||||||||||||||||||||||||||||| |||| |||| ||||||    
T  19310 ttagagagaagttggagtttctctcactaaaaaattaggtccgact 19355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0219 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 92
Target Start/End: Original strand, 15112 - 15152
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  15112 tttagagagaaattggagtttctctcactagaaatctaggg 15152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 86
Target Start/End: Original strand, 58354 - 58387
Alignment:
Q  53 ttagagagaagttggagtttctctcactagaaaa 86  Q
    ||||||||||||||||||||||||||||| ||||    
T  58354 ttagagagaagttggagtttctctcactaaaaaa 58387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 92
Target Start/End: Complemental strand, 1159 - 1119
Alignment:
Q  52 tttagagagaagttggagtttctctcactagaaaactaggg 92  Q
    ||||||||||||||| |||||| ||||||| ||||||||||    
T  1159 tttagagagaagttgaagtttcactcactaaaaaactaggg 1119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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