View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_21 (Length: 251)
Name: NF3881_low_21
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 2e-55; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 112 - 233
Target Start/End: Original strand, 4841062 - 4841183
Alignment:
| Q |
112 |
cattttaatattaaaagttaatttaacttgtatgcagttttcttattaataagctagcatcttggaaagacagactttgcattacttggtaaattggtgt |
211 |
Q |
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| T |
4841062 |
cattttaatattaaaagttaatttcacttgtatgcagttttgtcattaataagctagcatcttggaaagacagactttgcattacttggtaaattggtgt |
4841161 |
T |
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| Q |
212 |
gggatttacttatgcctactaa |
233 |
Q |
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| T |
4841162 |
gggatttacttatgcctactaa |
4841183 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 4838861 - 4838942
Alignment:
| Q |
1 |
aagacattttaatattgtgtatttattttctaaatatagaaagcttt-agattttgaagaagtctaaactaacttttattac |
81 |
Q |
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| T |
4838861 |
aagacattttaatattgtgtagttattttctaaatatagaaagctttgagattttaaagaagtctaaactaactgttattac |
4838942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 188 - 242
Target Start/End: Original strand, 4839295 - 4839349
Alignment:
| Q |
188 |
ttgcattacttggtaaattggtgtgggatttacttatgcctactaaccacctatg |
242 |
Q |
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| T |
4839295 |
ttgcattacttggtaaattggtgtggaatttacttatgcctactaaccacctatg |
4839349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 4838968 - 4839044
Alignment:
| Q |
107 |
ctaaccattttaatattaa----aagttaatttaacttgtatgcagttttcttattaataagctagcatcttggaaa |
179 |
Q |
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| T |
4838968 |
ctaaccattttaatattatttttaagttaatttcacttgtatgcggttttctcattaataagctagcatcttggaaa |
4839044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 4832367 - 4832442
Alignment:
| Q |
1 |
aagacattttaatattgtgtatttattttct-aaatatagaaagcttt-agattttgaagaagtctaaactaactt |
74 |
Q |
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|||| ||| |||||||||||| ||||| ||| |||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
4832367 |
aagatattctaatattgtgtagttattctcttaaatatagaaagctttgagattttgaataagtctaaactaactt |
4832442 |
T |
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