View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_22 (Length: 250)
Name: NF3881_low_22
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20989727 - 20989488
Alignment:
| Q |
1 |
tcttacactgtaagtttcggttcaatagtttatatgaatatgtcatattagttacacttannnnnnnnnnnngtttaccttacaaaatgatatataatag |
100 |
Q |
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| T |
20989727 |
tcttacactgtaagtttcggttcaatagtttatatgaatatgtcatattagttacacttattttttatttttgtttaccttacaaaatgatatataatag |
20989628 |
T |
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| Q |
101 |
taaattactttctttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctcttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20989627 |
taaattactttctttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaactactttaatctcttta |
20989528 |
T |
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| Q |
201 |
atttgtattcttgtattatactgtattgtattgttctgtg |
240 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
20989527 |
atttgtattcttgtattatactgtattgtattgttttgtg |
20989488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 21000717 - 21000610
Alignment:
| Q |
86 |
aatgatatataatagtaaattactttctttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaact |
185 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21000717 |
aatgatatataatagtaaattactttttttctttttccaatgcttgaacaccaaacagtgagaggattatctttgataatatctaatgtgaagaacaact |
21000618 |
T |
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| Q |
186 |
actttaat |
193 |
Q |
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|||||||| |
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| T |
21000617 |
actttaat |
21000610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 21000865 - 21000811
Alignment:
| Q |
1 |
tcttacactgtaagtttcggttcaatagtttatatgaatat--gtcatattagtt |
53 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
21000865 |
tcttacactgtaagtttcagttcaatagtttatatgaatataagtcatattagtt |
21000811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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