View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3881_low_23 (Length: 247)

Name: NF3881_low_23
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3881_low_23
NF3881_low_23
[»] chr4 (5 HSPs)
chr4 (18-233)||(5521078-5521293)
chr4 (185-233)||(17947291-17947339)
chr4 (147-233)||(51203217-51203304)
chr4 (185-233)||(31792659-31792707)
chr4 (159-233)||(11692160-11692234)
[»] chr5 (4 HSPs)
chr5 (159-231)||(7630624-7630696)
chr5 (185-232)||(40971875-40971922)
chr5 (159-229)||(38445677-38445747)
chr5 (185-235)||(756922-756972)
[»] chr3 (3 HSPs)
chr3 (185-233)||(16024809-16024857)
chr3 (185-233)||(1742004-1742052)
chr3 (184-238)||(33309685-33309739)
[»] chr2 (6 HSPs)
chr2 (149-233)||(578466-578550)
chr2 (186-233)||(25954753-25954800)
chr2 (185-230)||(578246-578291)
chr2 (151-233)||(35665327-35665410)
chr2 (188-233)||(35665590-35665635)
chr2 (185-233)||(28191738-28191786)
[»] chr1 (5 HSPs)
chr1 (159-235)||(14398278-14398354)
chr1 (185-231)||(33261725-33261771)
chr1 (185-231)||(33281884-33281930)
chr1 (152-231)||(1691546-1691626)
chr1 (161-210)||(49457999-49458048)
[»] chr8 (4 HSPs)
chr8 (159-233)||(23757296-23757370)
chr8 (151-230)||(158704-158784)
chr8 (185-233)||(15249587-15249635)
chr8 (185-231)||(33757908-33757954)
[»] chr7 (4 HSPs)
chr7 (159-233)||(18503576-18503650)
chr7 (185-235)||(33998852-33998902)
chr7 (184-229)||(39187701-39187746)
chr7 (145-235)||(30219029-30219120)
[»] chr6 (1 HSPs)
chr6 (185-229)||(4096776-4096820)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 2e-92; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 18 - 233
Target Start/End: Original strand, 5521078 - 5521293
Alignment:
Q  18 aattgattatggatctaattatatgatatgatcgtctatttaactatgagcatacttccttgttatgattttttggaaaattcaaatggnnnnnnnnacc 117  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||        |||    
T  5521078 aattgattatggatcgaattatatgatatgatcgtctatttaactatgagcgtacttccttgttatgattttttggaaaattcaaatggttttttttacc 5521177  T
Q  118 ttagttttagcctttgaaagggaaaattattatggttaaatagtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5521178 ttagttttagcctttgaaagggaaaattattatggttaaatagtttttcatttatataaatgtagcgaattttgatttaagtctctaaaaaatcaaatga 5521277  T
Q  218 gatgttttcatcctca 233  Q
    ||||||||||||||||    
T  5521278 gatgttttcatcctca 5521293  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 17947339 - 17947291
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  17947339 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctca 17947291  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 233
Target Start/End: Original strand, 51203217 - 51203304
Alignment:
Q  147 ttatggttaaata-gtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||||| ||||||||||  ||||||| | |||||||||||||| |||| ||||||||| ||||   ||| |||||||||||    
T  51203217 ttatggttaaataagtttttcgtccctataaatattgcgaattttgattttagtccctaaaaaataaaatagaatgctttcatcctca 51203304  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 31792659 - 31792707
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||| ||| |||||||||| |||||| |||||||||||||||    
T  31792659 aattttgattttagtttctaaaaaataaaatgaaatgttttcatcctca 31792707  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 11692160 - 11692234
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||| ||  ||||||| | |||||||||||||| |||||||||||||| |||    |||||||||||||||    
T  11692160 agtttttcatccctataaatatagcgaattttgattttagtctctaaaaaattaaacttaatgttttcatcctca 11692234  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 231
Target Start/End: Complemental strand, 7630696 - 7630624
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcct 231  Q
    |||||||||||| ||||||| |  | ||||||||||| |||| ||||||||| ||| ||||||||||||||||    
T  7630696 agtttttcgtctctataaatatatcaaattttgattttagtccctaaaaaataaaaagagatgttttcatcct 7630624  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 40971875 - 40971922
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctc 232  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||||    
T  40971875 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctc 40971922  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 38445677 - 38445747
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatc 229  Q
    |||||||||||  |||||||||  | ||||||||||| ||||||||||| || ||||||| ||||||||||    
T  38445677 agtttttcgtccctataaatgtatcaaattttgattttagtctctaaaatataaaatgagctgttttcatc 38445747  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 756972 - 756922
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctcata 235  Q
    ||||||||||| |||||||||||||| ||| |  |||||||||||||||||    
T  756972 aattttgattttagtctctaaaaaataaaacgcaatgttttcatcctcata 756922  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 16024857 - 16024809
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  16024857 aattttgattttagtccctaaaaaataaaatgagatgttttcatcctca 16024809  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Original strand, 1742004 - 1742052
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||| | || ||||||||| ||||||||||||||||||||||    
T  1742004 aattttgattttaatccctaaaaaataaaatgagatgttttcatcctca 1742052  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 238
Target Start/End: Original strand, 33309685 - 33309739
Alignment:
Q  184 gaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctcatataa 238  Q
    |||||||||||| |||| ||||||||| ||| | |||||||||||||||| ||||    
T  33309685 gaattttgattttagtccctaaaaaataaaacgggatgttttcatcctcacataa 33309739  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 233
Target Start/End: Complemental strand, 578550 - 578466
Alignment:
Q  149 atggttaaatagtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||||||  |||||||| |||||||||| | |||||||||||| |||| ||||||||| ||||   ||||| |||||||||    
T  578550 atggttaaataagttttcgtccatataaatgtagtgaattttgattttagtccctaaaaaataaaatagaatgttgtcatcctca 578466  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 233
Target Start/End: Complemental strand, 25954800 - 25954753
Alignment:
Q  186 attttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||||| ||| |||||||||| ||||||||||||||||||||||    
T  25954800 attttgattttagtttctaaaaaataaaatgagatgttttcatcctca 25954753  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 230
Target Start/End: Original strand, 578246 - 578291
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcc 230  Q
    ||||||||||| |||| ||||||||| |||||||||||||||||||    
T  578246 aattttgattttagtccctaaaaaataaaatgagatgttttcatcc 578291  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 233
Target Start/End: Original strand, 35665327 - 35665410
Alignment:
Q  151 ggttaaata-gtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaa-tgagatgttttcatcctca 233  Q
    ||||||||| ||||||||||  ||||||| | |||||||||||||| |||| ||||||||| ||| ||| |||||||||||||||    
T  35665327 ggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctaaaaaattaaagtga-atgttttcatcctca 35665410  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 233
Target Start/End: Complemental strand, 35665635 - 35665590
Alignment:
Q  188 tttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||| |||| ||||||| | ||||||||||||||||||||||    
T  35665635 tttgattttagtccctaaaaactaaaatgagatgttttcatcctca 35665590  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 28191786 - 28191738
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    ||||||||||| | ||| || ||||| ||||||||||||||||||||||    
T  28191786 aattttgattttaatctttacaaaataaaatgagatgttttcatcctca 28191738  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 14398354 - 14398278
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctcata 235  Q
    ||||||||||| || ||||| |  | ||||||||||| ||| ||||| |||| ||||||||||||||||||||||||    
T  14398354 agtttttcgtccatgtaaatatatcaaattttgattttagtttctaacaaataaaatgagatgttttcatcctcata 14398278  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 33261725 - 33261771
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcct 231  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  33261725 aattttgattttagtccctaaaaaataaaatgagatgttttcatcct 33261771  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 33281884 - 33281930
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcct 231  Q
    ||||||||||| |||| ||||||||| ||||||||||||||||||||    
T  33281884 aattttgattttagtccctaaaaaataaaatgagatgttttcatcct 33281930  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 231
Target Start/End: Complemental strand, 1691626 - 1691546
Alignment:
Q  152 gttaaatag-tttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaa-tgagatgttttcatcct 231  Q
    ||||||||| |||||||||  ||||||| | |||||||||||||| |||||||||||||| ||| ||| |||||||||||||    
T  1691626 gttaaataggtttttcgtccctataaatatagcgaattttgattttagtctctaaaaaattaaactga-atgttttcatcct 1691546  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 49458048 - 49457999
Alignment:
Q  161 tttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaat 210  Q
    ||||||| || ||||||||| ||||||||| |||| ||||||||||||||    
T  49458048 tttttcgcctttataaatgtagcgaattttaattttagtctctaaaaaat 49457999  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 23757296 - 23757370
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||| ||| ||||||| | || |||||| |||| | || ||||||||| ||||||||||||||||||||||    
T  23757296 agtttttcatctttataaatatagcaaattttaattttaatccctaaaaaataaaatgagatgttttcatcctca 23757370  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 230
Target Start/End: Original strand, 158704 - 158784
Alignment:
Q  151 ggttaaata-gtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcc 230  Q
    ||||||||| ||||||||||||| ||||| |  | ||||||| |||  ||| ||||||||| |||||||||||||||||||    
T  158704 ggttaaataagtttttcgtctatgtaaatatatcaaattttggttttggtccctaaaaaataaaatgagatgttttcatcc 158784  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 15249635 - 15249587
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||||||  ||| ||||||||| ||||||||||||||||||||||    
T  15249635 aattttgattttcgtcactaaaaaataaaatgagatgttttcatcctca 15249587  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 33757908 - 33757954
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcct 231  Q
    ||||||||||| ||||| | |||||| ||||||||||||||||||||    
T  33757908 aattttgattttagtctttcaaaaatgaaatgagatgttttcatcct 33757954  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 233
Target Start/End: Original strand, 18503576 - 18503650
Alignment:
Q  159 agtttttcgtctatataaatgtggcgaattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctca 233  Q
    |||||||||||  ||||||| |  | |||||||||||   || ||||||||| ||||||||||||||||||||||    
T  18503576 agtttttcgtccttataaatatatcaaattttgatttttatccctaaaaaataaaatgagatgttttcatcctca 18503650  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 33998902 - 33998852
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatcctcata 235  Q
    ||||||||||| |||| ||||||||| ||||||||| |||| |||||||||    
T  33998902 aattttgattttagtccctaaaaaataaaatgagatatttttatcctcata 33998852  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 39187746 - 39187701
Alignment:
Q  184 gaattttgatttaagtctctaaaaaatcaaatgagatgttttcatc 229  Q
    |||||||||||| ||||| || ||||| ||||||||||||||||||    
T  39187746 gaattttgattttagtctttagaaaataaaatgagatgttttcatc 39187701  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 30219120 - 30219029
Alignment:
Q  145 tattatggttaaata-gtttttcgtctatataaatgtggcgaattttgatttaagtctcta-aaaaatcaaatgagatgttttcatcctcata 235  Q
    ||||| ||||||||| ||||||||||  ||||||| | |||||||||||||| |||| ||| |||| | || ||| |||||||||||||||||    
T  30219120 tattagggttaaataagtttttcgtccttataaatatagcgaattttgattttagtccctacaaaactaaactga-atgttttcatcctcata 30219029  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 4096820 - 4096776
Alignment:
Q  185 aattttgatttaagtctctaaaaaatcaaatgagatgttttcatc 229  Q
    ||||||||||| | || ||||||||| ||||||||||||||||||    
T  4096820 aattttgattttaatccctaaaaaattaaatgagatgttttcatc 4096776  T

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