View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_28 (Length: 203)
Name: NF3881_low_28
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 20232054 - 20231859
Alignment:
| Q |
1 |
atcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaatctttcatcactatctcct |
100 |
Q |
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| T |
20232054 |
atcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaatctttcatcactatctcct |
20231955 |
T |
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| Q |
101 |
gccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactagtaatattcatctca |
196 |
Q |
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| T |
20231954 |
gccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactagtaatattcatctca |
20231859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 22126038 - 22125843
Alignment:
| Q |
1 |
atcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaatctttcatcactatctcct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22126038 |
atcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaatctttcatcactatctcct |
22125939 |
T |
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| Q |
101 |
gccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactagtaatattcatctca |
196 |
Q |
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| T |
22125938 |
gccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactagtaatattcatctca |
22125843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 1e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10402863 - 10403054
Alignment:
| Q |
1 |
atcacttgacaaatcttgtgtacattgaccaagtgtataaagtgtttgcaaatcattcactttcagtgattttgttccaaatctttcatcactatctcct |
100 |
Q |
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||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||| | ||||||||| || |
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| T |
10402863 |
atcacttgataaatcttgtgtacactgaccaagtgtataaagtgtttgcaaatcattcaatttcaatgattttgttccatatctcttatcactatcccca |
10402962 |
T |
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| Q |
101 |
gccacaattgccacatttgataaggtagttgatataacaaaattgaacaagtttctctccttgttgggactagaatcactagtaatattcat |
192 |
Q |
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|||||||||||||| |||||||||| | ||||||| |||||||| |||||||||||||||| |||||||||||||||| ||||| |||||| |
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| T |
10402963 |
gccacaattgccacttttgataaggcatttgatattacaaaattatacaagtttctctcctttttgggactagaatcaccagtaacattcat |
10403054 |
T |
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