View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3881_low_9 (Length: 378)
Name: NF3881_low_9
Description: NF3881
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3881_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 326
Target Start/End: Complemental strand, 24575734 - 24575427
Alignment:
| Q |
18 |
atttgagattctcacttatgtatgtgagtttttaa-taatactttctatnnnnnnnnnnnnntcaatattaataatatttactcttacaaatcaacaaat |
116 |
Q |
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| T |
24575734 |
atttgagattctcatttatgtatgtgagtttttaaataatactttctataaaaaaaaaaa--tcaatatta-taatatttacttttacaaatcaacaaat |
24575638 |
T |
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| Q |
117 |
tctagaacgataactcaaattcagttaaaaacaaaaattagaaacctcaaatttttcattttgtgattgaaacaacgttcacattgtcactcaaggaatt |
216 |
Q |
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| T |
24575637 |
tctagaacgataactcaaattcagtaaaaaacaaaaattaaaaacctcaaatttttcattttgtgatagaaacaacgttcacattgtcacacaaggaatc |
24575538 |
T |
|
| Q |
217 |
atgagatttaatttccttttcaattcgttggttttcattgacattgaaaat-gnnnnnnntcatgcaatatatctaaaatatttaaaaaatttagagaac |
315 |
Q |
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| T |
24575537 |
atgagttttgatttccttctcaattcgttggttttcattgacattgaaaataaaaaaaaatcatgcaatatatctaaaatatttaaaaaatttagagaac |
24575438 |
T |
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| Q |
316 |
aattataatac |
326 |
Q |
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| T |
24575437 |
aattataatac |
24575427 |
T |
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Back To:
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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 189 - 255
Target Start/End: Complemental strand, 130688 - 130622
Alignment:
| Q |
189 |
caacgttcacattgtcactcaaggaattatgagatttaatttccttttcaattcgttggttttcatt |
255 |
Q |
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| T |
130688 |
caacggtcacattgtcacacaaggaatcatgagctttgatttccttctcaatccgttgattttcatt |
130622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 33781561 - 33781601
Alignment:
| Q |
227 |
atttccttttcaattcgttggttttcattgacattgaaaat |
267 |
Q |
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| T |
33781561 |
atttccttctcaattcattgattttcattgacattgaaaat |
33781601 |
T |
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