View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_high_17 (Length: 222)
Name: NF3882_high_17
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 14 - 204
Target Start/End: Original strand, 7333039 - 7333231
Alignment:
| Q |
14 |
attatactcatcaagaacactcattagcacaacccaactaactttatgccaaactaatttcaactattagctacattgcttgttcnnnnnnnnnnn--ta |
111 |
Q |
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| T |
7333039 |
attaaactcatcaagaacactcattagcacaacccaactaactttatgccaaactaatttcaactattagctacattgcttgttcaaaaaaaataaaata |
7333138 |
T |
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| Q |
112 |
ctaatagctatattctgctacttaaaattcagttagtcaagagttgcaagcctcagttatcggaaaattttttctactgaatcaagctggatg |
204 |
Q |
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| T |
7333139 |
ctaatagctatattctgctacttaaaattcagttagtcaagagttgcaagcctcagttatcagacaattttttctactgaatctagctggatg |
7333231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 111 - 204
Target Start/End: Complemental strand, 7300552 - 7300459
Alignment:
| Q |
111 |
actaatagctatattctgctacttaaaattcagttagtcaagagttgcaagcctcagttatcggaaaattttttctactgaatcaagctggatg |
204 |
Q |
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| T |
7300552 |
actaacagctacattcttctacttaaaattcatttagtcaagagttacaagtcacagttatcagacaattttttctactgaatctagctggatg |
7300459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 49 - 90
Target Start/End: Complemental strand, 7300579 - 7300538
Alignment:
| Q |
49 |
aactaactttatgccaaactaatttcaactattagctacatt |
90 |
Q |
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| T |
7300579 |
aactaattttatgccaaactaatttcaactaacagctacatt |
7300538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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