View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_11 (Length: 274)
Name: NF3882_low_11
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 266
Target Start/End: Original strand, 40222918 - 40223165
Alignment:
| Q |
19 |
caatcagctgttattcagaagtactgcagtaataataacctgaatcttaatgcataaattaattgggacgaaataaatgtaatgtaatgtattttaaatt |
118 |
Q |
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| T |
40222918 |
caatcagctgttattcagaagtactgcagtaataataacctgaatcttaatgcataaattaattaggacgaaataaatgtaatgtaatgtattttaaatt |
40223017 |
T |
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| Q |
119 |
tgtgacataaagaaagaacttgccatatgccccttcactgactcttttgctgtaaaaccttttgtcaacttaaactgtgaagcacgtccttcacactctt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40223018 |
tgtgacataaagaaagaacttgccatatgccccttcactgactcttttgctgtaaaaccttttgtcaacttaaactgtgtagcacgtccttcacactctt |
40223117 |
T |
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| Q |
219 |
catgattggaacatatattaatgttcatcgaattagcttgatattctt |
266 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
40223118 |
catgattggaacatatattaatgttcatcgaattagcttgattttctt |
40223165 |
T |
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