View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_13 (Length: 250)
Name: NF3882_low_13
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 12418490 - 12418732
Alignment:
| Q |
1 |
ttatgcataaaaacttgaatgcacatcagtcaatgtgggacttggtgttaaaacttttgaaatatagataattaaaaaggtttaaggtttctcactaagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12418490 |
ttatgcataaaaacttgaatgcacatcagtcaatgttggacttggtgttaaaacttttgaaatatagataattaaaaaggtttaaggtttctcactaagc |
12418589 |
T |
|
| Q |
101 |
nnnnnnncttgatttggcatggtgttgaatagtcacaatttcatgttttaattagttttaaccttcactatcaaggttcaagacccttttttaatacttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12418590 |
aaaaaaacttgatttggcatggtgttgaatagtcacaatttcatgttttaattagttttaaccttcactatcaagattcaagacccttttttaatacttt |
12418689 |
T |
|
| Q |
201 |
tgcttccttcaaaattctataaactccccgtgtgcctatgcta |
243 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12418690 |
tgcttccttcaaaattctataaactccccgtgtgcctaagcta |
12418732 |
T |
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