View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_19 (Length: 234)
Name: NF3882_low_19
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 8230984 - 8231186
Alignment:
| Q |
14 |
caaagggtatagtccaacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgag |
113 |
Q |
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| T |
8230984 |
caaagggtatagtccaacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgag |
8231083 |
T |
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| Q |
114 |
aacaacagctcgttgcaattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttcata |
213 |
Q |
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| T |
8231084 |
aacaacagctcgttgcaattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttcata |
8231183 |
T |
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| Q |
214 |
ggt |
216 |
Q |
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||| |
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| T |
8231184 |
ggt |
8231186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 50 - 200
Target Start/End: Original strand, 8242622 - 8242769
Alignment:
| Q |
50 |
ttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgagaacaacagctcgttgcaattttccaccttatgggaa |
149 |
Q |
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| T |
8242622 |
ttccagcagtgtttgtgtttggagattcaatcatggatactggaaa---taacaacaacatgacaacaccatctcggtgcaattaccctccatatgggaa |
8242718 |
T |
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| Q |
150 |
agattttaaaggaggaattccaaccggaagatttagcaatggaaaagttcc |
200 |
Q |
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| T |
8242719 |
agattttaaaggaggaattccaacaggaagatttagcaacggaaaggttcc |
8242769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 14 - 216
Target Start/End: Original strand, 8270135 - 8270334
Alignment:
| Q |
14 |
caaagggtatagtccaacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgag |
113 |
Q |
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| T |
8270135 |
caaaggctatagtcaaacttcaaccaaatgtttcaattccagcagtgtttgtgtttggagattcaattacggatacagg---aaataacaactttaaaaa |
8270231 |
T |
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| Q |
114 |
aacaacagctcgttgcaattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagacttcata |
213 |
Q |
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| T |
8270232 |
aacaatagctcgatgcgattttgcaccatatggaaaagattttccaggagggattgcaacaggtcgatttagcaacggaaaggttccatcagaccttata |
8270331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 200
Target Start/End: Original strand, 8252577 - 8252745
Alignment:
| Q |
29 |
aacttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgagaacaacagctcgttg |
128 |
Q |
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|||| |||||||||| ||| ||||||||||||| || ||||||||||| ||| ||||||| || || || ||||||| | |||| || ||| || |
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| T |
8252577 |
aactgccaccaaatgcttcgtttccagcagtgtttgtatttggagattcaatcatggatactggaaataacaacaacag---gccaacaccaactcagtg |
8252673 |
T |
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| Q |
129 |
caattttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttcc |
200 |
Q |
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||| || || || ||||| ||||||||| |||||||||||||||| |||||||||||||||||||| ||||| |
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| T |
8252674 |
caaattccctccatatggaaaagattttcaaggaggaattccaacaggaagatttagcaatggaaaggttcc |
8252745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 8285952 - 8286023
Alignment:
| Q |
31 |
cttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataac |
102 |
Q |
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| T |
8285952 |
cttccaccaaatgttacagttccagcagtgatagcatttggagattcaatagttgattcaggaaacaataac |
8286023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 208
Target Start/End: Original strand, 53274196 - 53274373
Alignment:
| Q |
31 |
cttccaccaaatgtttcagttccagcagtgttggtgtttggagattctatcgtggatacaggtaacaataacaacaatttgagaacaacagctcgttgca |
130 |
Q |
| |
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|||||||||||||||||| |||||||||| || |||||||||||||| ||| ||||||| || ||||| || || || ||| |||| ||| | |||| |
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| T |
53274196 |
cttccaccaaatgtttcatttccagcagtatttgtgtttggagattcaatcatggatacgggcaacaacaataataacatgaaaacatatgctaggtgca |
53274295 |
T |
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| Q |
131 |
attttccaccttatgggaaagattttaaaggaggaattccaaccggaagatttagcaatggaaaagttccctcagact |
208 |
Q |
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| T |
53274296 |
attttcttccatatggtaaagatttcaatggaggcatccctactggtcggttttgcaatggaaaagttccatcagact |
53274373 |
T |
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