View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_2 (Length: 698)
Name: NF3882_low_2
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 482; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 5 - 622
Target Start/End: Original strand, 9828052 - 9828671
Alignment:
| Q |
5 |
ggtagataatactcatagtagatcggatttttaaattattttcgttttagggtaaaatgagagtgatggaagatcggttgcttaggaataaagaacacaa |
104 |
Q |
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| T |
9828052 |
ggtaaataatactcatagtaggtcggatttttaa-ttattttcgttttagggtaaaatgagagtgatggtagatcggttgcttaggaataaagaacacaa |
9828150 |
T |
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| Q |
105 |
tcgggtgccatcttctcaagaacaaggtgcatatgacttatttgttaatctattgatgttagaagacgagaaacgatgtgatattactaaaataccatca |
204 |
Q |
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| T |
9828151 |
tcgggtgtcatcttctcaagaacacggtgcatatgacttatttgttaatctattgatgttagaagacgagaaacgatgtgatattactaaaatcccatca |
9828250 |
T |
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| Q |
205 |
ggggatgggtgcatggaggggaaactcgatccctaccagagatggggatggagatcaaaattcctaccca-ccggagtacatgttcgggatttttgtggg |
303 |
Q |
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| T |
9828251 |
ggggatgggtgcatggtggggaaactcgatccctataagagacggggatggatatcaaaattccaaccctgccggagtacatgttcgggttttctgtgcg |
9828350 |
T |
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| Q |
304 |
gaataatcggtgtttgggggtgagagaggtaaaactagtctccacccccattggtatatatacatatcaccaacatggatgtacctgcaaaa--aacatt |
401 |
Q |
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| T |
9828351 |
ggatactcgggggttgggggtgagagaggtaaaactaatctccacccccattggtatatatacatatcaccaacatgggtgtacctgcaaaaaaaacatt |
9828450 |
T |
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| Q |
402 |
ttgatgtcaaagtcagccattatgctagtaagtaacaagtgagtaattgtagagaaaatatggtgaccgtacctagagggaagaccccctgttgatctta |
501 |
Q |
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| T |
9828451 |
ttgatgtcaaagtcagacattatggtagtaagtaacaagtgagtaattgtagagaaaatatggtgatcgtacctagagggaagaccccctgttgatctta |
9828550 |
T |
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| Q |
502 |
tggctccaaagtgacactttgatggttgttgctatcatcatgttgaacttgtataagataagctaagttgtaatggaaaactgaatccgagataaacaat |
601 |
Q |
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| T |
9828551 |
tggctccaaagtgacaccttgatggttgttgccatcatcatgttgaacttgtataagataagctaagttgttatggaaaactgaatccgagataaacaat |
9828650 |
T |
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| Q |
602 |
agcacttatcatatttgaata |
622 |
Q |
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| T |
9828651 |
agcacttatcatatttgaata |
9828671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 624 - 683
Target Start/End: Original strand, 9828748 - 9828806
Alignment:
| Q |
624 |
gttgaacttttgttgttgggcaaatctaattccttcgaagtgagctttcattgttggatc |
683 |
Q |
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| T |
9828748 |
gttgaacttttgttattgggcaaatctaatgccttccaagtgagc-ttcattgttggatc |
9828806 |
T |
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