View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_21 (Length: 207)
Name: NF3882_low_21
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 42740705 - 42740868
Alignment:
| Q |
12 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaacatcacactcattccactcggtatccagcacaaagcaag |
111 |
Q |
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| T |
42740705 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaacatcacactcattccactcggtatccagcataaagcaag |
42740804 |
T |
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| Q |
112 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42740805 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
42740868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 21744851 - 21745014
Alignment:
| Q |
12 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaactaaaagcttaacatcacactcattccactcggtatccagcacaaagcaag |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21744851 |
tccttatttcttcctcatgcttagagaccacaatttctacaaaagcaaattaaaagcttaacatcccactcattccactcggtatccagcacaaagcaag |
21744950 |
T |
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| Q |
112 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
175 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21744951 |
ttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagtatataac |
21745014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 69 - 173
Target Start/End: Complemental strand, 181025 - 180921
Alignment:
| Q |
69 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
168 |
Q |
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|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |
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| T |
181025 |
ttaacatcacactcgttccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggctcagtagaacagaaaaaactccagaagcagt |
180926 |
T |
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| Q |
169 |
atata |
173 |
Q |
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||||| |
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| T |
180925 |
atata |
180921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 4e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 6960271 - 6960370
Alignment:
| Q |
69 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
168 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||| |
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| T |
6960271 |
ttaacatcacactcattccactcggtatccagcgcaaagcaagttcattttcaagtactttaaactggcttagtcggacagaaaaaacaccagaagcagt |
6960370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 168
Target Start/End: Original strand, 6967701 - 6967800
Alignment:
| Q |
69 |
ttaacatcacactcattccactcggtatccagcacaaagcaagttcattttcaagtactttaaactggttcagtaggacagaaaaaacaccagaagcagt |
168 |
Q |
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||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||| ||||| | |||||||||||||||| |||| |
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| T |
6967701 |
ttaacatcacattcattccactcagtatccagcaaaaagcaagttcattttcaagtactttaagatggctcagtcaaatagaaaaaacaccagaaacagt |
6967800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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