View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3882_low_3 (Length: 539)

Name: NF3882_low_3
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3882_low_3
NF3882_low_3
[»] chr5 (20 HSPs)
chr5 (1-523)||(37704717-37705239)
chr5 (1-102)||(37699242-37699349)
chr5 (228-370)||(34599459-34599603)
chr5 (222-370)||(2143247-2143394)
chr5 (250-473)||(13953394-13953616)
chr5 (400-477)||(1629760-1629837)
chr5 (1-42)||(37437782-37437823)
chr5 (378-494)||(1629683-1629799)
chr5 (378-494)||(29532047-29532161)
chr5 (222-325)||(26325678-26325781)
chr5 (380-421)||(2143379-2143420)
chr5 (388-473)||(30384213-30384297)
chr5 (225-273)||(38458771-38458819)
chr5 (388-475)||(37704830-37704917)
chr5 (379-442)||(41232901-41232964)
chr5 (160-202)||(30384256-30384298)
chr5 (243-303)||(29531914-29531975)
chr5 (378-474)||(38458805-38458899)
chr5 (161-197)||(1630012-1630048)
chr5 (398-494)||(29531855-29531950)
[»] chr2 (15 HSPs)
chr2 (237-473)||(4558769-4559007)
chr2 (241-492)||(8198509-8198759)
chr2 (241-492)||(8203269-8203519)
chr2 (409-492)||(45385838-45385921)
chr2 (378-492)||(4923428-4923542)
chr2 (378-473)||(42053964-42054059)
chr2 (237-318)||(6739472-6739554)
chr2 (384-473)||(3289442-3289531)
chr2 (222-282)||(42054042-42054102)
chr2 (424-490)||(4558680-4558745)
chr2 (250-303)||(4923553-4923607)
chr2 (415-473)||(8198419-8198477)
chr2 (415-473)||(8203179-8203237)
chr2 (419-494)||(32546464-32546538)
chr2 (380-440)||(28358958-28359018)
[»] chr6 (22 HSPs)
chr6 (237-479)||(16419591-16419837)
chr6 (238-365)||(196111-196238)
chr6 (381-492)||(12458392-12458504)
chr6 (335-473)||(33547750-33547889)
chr6 (222-370)||(17411121-17411270)
chr6 (240-364)||(28477384-28477509)
chr6 (240-364)||(29789836-29789961)
chr6 (222-411)||(7004200-7004390)
chr6 (162-204)||(17411089-17411131)
chr6 (378-474)||(10544282-10544376)
chr6 (256-352)||(32548138-32548235)
chr6 (386-442)||(7202300-7202356)
chr6 (243-326)||(33547849-33547933)
chr6 (265-370)||(7202313-7202419)
chr6 (245-318)||(10544136-10544210)
chr6 (264-364)||(29693282-29693383)
chr6 (378-475)||(31314513-31314609)
chr6 (161-204)||(196244-196287)
chr6 (253-347)||(9405267-9405362)
chr6 (400-473)||(196063-196135)
chr6 (378-419)||(33547744-33547785)
chr6 (393-473)||(33547811-33547890)
[»] chr7 (26 HSPs)
chr7 (222-492)||(41331168-41331439)
chr7 (237-492)||(18128375-18128632)
chr7 (381-474)||(30551947-30552040)
chr7 (381-474)||(6589558-6589651)
chr7 (398-477)||(12422044-12422123)
chr7 (387-494)||(32804629-32804736)
chr7 (385-473)||(1532197-1532285)
chr7 (296-484)||(20389633-20389822)
chr7 (378-473)||(28003341-28003434)
chr7 (237-323)||(48447315-48447402)
chr7 (380-473)||(5755594-5755685)
chr7 (237-326)||(12264801-12264890)
chr7 (237-316)||(12422262-12422342)
chr7 (390-494)||(12422352-12422455)
chr7 (294-494)||(21920965-21921164)
chr7 (237-288)||(28002279-28002330)
chr7 (394-459)||(32918529-32918595)
chr7 (381-442)||(1532441-1532501)
chr7 (398-474)||(6586862-6586938)
chr7 (243-283)||(32857850-32857890)
chr7 (393-472)||(48447283-48447362)
chr7 (161-199)||(12422352-12422390)
chr7 (379-436)||(5762696-5762753)
chr7 (222-270)||(28002235-28002283)
chr7 (172-204)||(32857805-32857837)
chr7 (388-492)||(45477966-45478070)
[»] chr4 (26 HSPs)
chr4 (222-353)||(22519386-22519518)
chr4 (222-473)||(31095124-31095377)
chr4 (378-492)||(22519807-22519921)
chr4 (384-473)||(48194394-48194483)
chr4 (222-352)||(49291205-49291335)
chr4 (400-492)||(33617920-33618010)
chr4 (19-102)||(16840857-16840946)
chr4 (237-473)||(20141745-20141983)
chr4 (385-473)||(22889586-22889674)
chr4 (385-473)||(22941250-22941338)
chr4 (162-202)||(31095092-31095132)
chr4 (398-473)||(53769786-53769861)
chr4 (388-494)||(2323266-2323372)
chr4 (405-479)||(42676809-42676883)
chr4 (222-287)||(51580077-51580140)
chr4 (388-471)||(34013780-34013861)
chr4 (393-468)||(22519373-22519448)
chr4 (379-474)||(34717567-34717660)
chr4 (378-429)||(40070309-40070360)
chr4 (388-442)||(31095078-31095131)
chr4 (237-279)||(53769786-53769828)
chr4 (378-419)||(22519313-22519354)
chr4 (381-442)||(48194179-48194239)
chr4 (405-477)||(22519774-22519846)
chr4 (393-473)||(31095106-31095186)
chr4 (388-452)||(55368780-55368844)
[»] scaffold0591 (1 HSPs)
scaffold0591 (356-494)||(3866-4003)
[»] chr8 (20 HSPs)
chr8 (387-473)||(2277209-2277295)
chr8 (394-474)||(27532989-27533069)
chr8 (378-457)||(37064689-37064768)
chr8 (390-492)||(15907689-15907790)
chr8 (378-492)||(15907944-15908058)
chr8 (222-474)||(2510015-2510263)
chr8 (410-492)||(12807666-12807748)
chr8 (222-352)||(3806871-3807000)
chr8 (162-207)||(18080600-18080645)
chr8 (381-477)||(32566875-32566969)
chr8 (387-475)||(2967707-2967794)
chr8 (378-473)||(3806998-3807091)
chr8 (237-369)||(12189869-12190002)
chr8 (237-369)||(12434297-12434430)
chr8 (387-457)||(45445141-45445210)
chr8 (404-496)||(41123-41216)
chr8 (223-287)||(8453098-8453163)
chr8 (400-445)||(32566724-32566769)
chr8 (394-470)||(3806856-3806932)
chr8 (243-358)||(32566752-32566867)
[»] chr1 (22 HSPs)
chr1 (237-473)||(363615-363853)
chr1 (237-472)||(47726457-47726693)
chr1 (237-472)||(47747763-47747999)
chr1 (381-474)||(16554303-16554396)
chr1 (238-368)||(29954870-29955000)
chr1 (384-473)||(18470189-18470279)
chr1 (378-473)||(802251-802346)
chr1 (385-492)||(12656368-12656474)
chr1 (387-473)||(16026108-16026194)
chr1 (298-494)||(11016877-11017075)
chr1 (237-303)||(26706207-26706274)
chr1 (378-473)||(46530163-46530258)
chr1 (385-442)||(48130213-48130268)
chr1 (390-479)||(48130428-48130516)
chr1 (393-492)||(363806-363906)
chr1 (378-457)||(26706353-26706432)
chr1 (390-492)||(46530411-46530517)
chr1 (237-283)||(18470384-18470430)
chr1 (381-442)||(16026346-16026406)
chr1 (385-442)||(18470439-18470495)
chr1 (222-370)||(47600499-47600648)
chr1 (378-494)||(23808083-23808199)
[»] chr3 (12 HSPs)
chr3 (234-469)||(30534432-30534666)
chr3 (237-473)||(51265744-51265984)
chr3 (285-442)||(44291025-44291182)
chr3 (378-474)||(44291413-44291509)
chr3 (388-492)||(48200367-48200471)
chr3 (398-492)||(33291582-33291676)
chr3 (381-442)||(51265679-51265739)
chr3 (161-204)||(44291420-44291463)
chr3 (237-303)||(50898882-50898948)
chr3 (391-492)||(1662257-1662357)
chr3 (378-414)||(9343215-9343251)
chr3 (400-492)||(14747077-14747167)


Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 37704717 - 37705239
Alignment:
Q  1 tgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704717 tgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaaga 37704816  T
Q  101 gcaaattacgatacttttaagttatttaattataacaaatcggnnnnnnnnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||                |||||||||| ||||||||||||||||||||||||||||||    
T  37704817 gcaaattacgagacttttaagttatttaattataacaaatcggttttttaagattttttcgtatcacttgcgtcatttaagttatttaattataacaagt 37704916  T
Q  201 tagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataa 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704917 tagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcgtaacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataa 37705016  T
Q  301 cttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataat 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||    
T  37705017 cttgcagttttaagatctgaaatccctcaatttgttacagttaaatagcttagaggacctaattggtacgaaaaaaattaaaggaccaacttgttataat 37705116  T
Q  401 taattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaacatttat 500  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37705117 taattaacttaaaggacctaagtggtacgtaaaaatcttaaatgaccaatttcttacaactaaataacttaaaagacttatggtgtaatttaacatttat 37705216  T
Q  501 tttatgtacgtgttttttgtatg 523  Q
    |||||||||||||||||||||||    
T  37705217 tttatgtacgtgttttttgtatg 37705239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 37699242 - 37699349
Alignment:
Q  1 tgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa------cattaattgtatttagaatcggagacttagacttcttcaaatgtacatactt 94  Q
    |||||||| ||||||||||||||||| |||||||||||||||      |||||||||||||||| | ||||||||||||||||||||| || ||| ||||    
T  37699242 tgagtaatttgcttaaaaatacacctaaaatgaagaaaataataacaacattaattgtatttagcaacggagacttagacttcttcaactgaacagactt 37699341  T
Q  95 taaagagc 102  Q
    ||||||||    
T  37699342 taaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 370
Target Start/End: Original strand, 34599459 - 34599603
Alignment:
Q  228 ttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-cc 325  Q
    |||||||| |||||||||||| |||  |||| ||| |||||||| |||||||||||| ||||||||| ||||||||| || ||||||||||| |||| ||    
T  34599459 ttagttatttaagtatttttcttaatgcttaagtcctttaagttgtttaattgtaacttttaggtccagaataacttacatttttaagatctaaaatacc 34599558  T
Q  326 ctcaatttcttacagttaaatagcttagaggacctaattggtacg 370  Q
    |  || || |||| |||||||| |||| | ||||||||| |||||    
T  34599559 caaaaattgttacggttaaataacttaaatgacctaattagtacg 34599603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 222 - 370
Target Start/End: Complemental strand, 2143394 - 2143247
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 320  Q
    |||||||||||  | | |||||||||| ||||| ||||||  ||||||||||||||||| |||||| ||| |||||||||||| ||  |||||||| | |    
T  2143394 aacaagttagtcctttcagtatttttcgtaacatttaggttttttaagttatttaattgaaactttgaggccccgaataacttacatgtttaagatataa 2143295  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 370  Q
    ||||||  || || ||  ||||||||| |||| ||||||||||| |||||    
T  2143294 aatcccctaaattgtt--agttaaataacttaaaggacctaattagtacg 2143247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 250 - 473
Target Start/End: Original strand, 13953394 - 13953616
Alignment:
Q  250 taacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatag 348  Q
    ||||| ||| ||| ||||| |||||||| |||||||||  | ||  ||||||||| || ||||| | |||||||||||| || || ||||  |||||||     
T  13953394 taacatttaagtcctttaaattatttaactgtaacttttagaccttgaataacttacatttttagg-tctgaaatcccttaaatttttacgattaaataa 13953492  T
Q  349 cttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatca 448  Q
    |||| | ||| |||||||||||       ||||| ||| ||||||||| |||||||||||||||| ||| |||| |||| | ||||||||||||  | ||    
T  13953493 cttaaaagacgtaattggtacggaaaaacttaaaagacaaacttgttacaattaattaacttaaatgacttaagcggtatg-aaaaaacttaaaaaacca 13953591  T
Q  449 atttcttacaactaaataacttaaa 473  Q
    |||| ||| || |||| ||||||||    
T  13953592 atttattataattaaacaacttaaa 13953616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 400 - 477
Target Start/End: Complemental strand, 1629837 - 1629760
Alignment:
Q  400 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    |||| ||||||||||||| ||| || |||| |||||||||||| |||| |||| |||||| ||| |||||||||||||    
T  1629837 ttaaataacttaaaggacttaattgctacggaaaaaacttaaaggatcgatttgttacaattaattaacttaaaagac 1629760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 37437782 - 37437823
Alignment:
Q  1 tgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa 42  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  37437782 tgagtaatttgcttaaaaatacacctgaaatgaagaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 494
Target Start/End: Complemental strand, 1629799 - 1629683
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    |||||||| | | |||||| |||||||||||||||| ||||||| | ||||  ||||   |||||  |  ||||| |||||| ||||||||||||| |||    
T  1629799 ttaaaggatcgatttgttacaattaattaacttaaaagacctaatttgtacagaaaatttttaaagaacgaatttattacaattaaataacttaaaggac 1629700  T
Q  478 ttatggtgtaatttaac 494  Q
    || ||||||||||||||    
T  1629699 ttttggtgtaatttaac 1629683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 378 - 494
Target Start/End: Original strand, 29532047 - 29532161
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    ||||| ||||||||| ||| | ||||||||| ||||| | ||||||| |||| |||||| ||||| | ||||||| |||||| | |||||||| ||||||    
T  29532047 ttaaatgaccaactttttacagttaattaacataaagaagctaagtgatacg-aaaaaatttaaaggttcaatttgttacaattgaataactt-aaagac 29532144  T
Q  478 ttatggtgtaatttaac 494  Q
     |||| |||||||||||    
T  29532145 atatgatgtaatttaac 29532161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 222 - 325
Target Start/End: Original strand, 26325678 - 26325781
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 321  Q
    ||||||||||| || ||||||||| |  |||||||||  || ||||| |||||||||| ||||||||| ||| |||||||||  | |||||| || ||||    
T  26325678 aacaagttagtcatttaagtatttattgtaacacttaaatcctttaaattatttaattataactttagatcctgaataacttatatttttaatatttgaa 26325777  T
Q  322 atcc 325  Q
    ||||    
T  26325778 atcc 26325781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 380 - 421
Target Start/End: Original strand, 2143379 - 2143420
Alignment:
Q  380 aaaggaccaacttgttataattaattaacttaaaggacctaa 421  Q
    ||||||| ||||||||| ||||||||||||||||||||||||    
T  2143379 aaaggactaacttgttacaattaattaacttaaaggacctaa 2143420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 388 - 473
Target Start/End: Complemental strand, 30384297 - 30384213
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||| |||||| ||||||||| ||| |||||  |||| |||||||||||| ||  ||||| |||||| |||||||||||||    
T  30384297 aacttgttacaattaaataacttaaaagacgtaagtaatacg-aaaaaacttaaaagacaaatttgttacaattaaataacttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 38458819 - 38458771
Alignment:
Q  225 aagttagttatgtaagtatttttcataacacttaggtcgtttaagttat 273  Q
    |||||||| || ||||||||||||||||||||| |||| ||||||||||    
T  38458819 aagttagtcatttaagtatttttcataacacttgggtcctttaagttat 38458771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 388 - 475
Target Start/End: Complemental strand, 37704917 - 37704830
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 475  Q
    |||||||||||||||| ||||||||| |||  ||||| |||| ||||| ||||||  | | |||| ||| || |||||||||||||||    
T  37704917 aacttgttataattaaataacttaaatgacgcaagtgatacgaaaaaatcttaaaaaaccgatttgttataattaaataacttaaaag 37704830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 442
Target Start/End: Complemental strand, 41232964 - 41232901
Alignment:
Q  379 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||| ||||||||| ||| |||||||| |||||||||| ||||||||||   ||||||||||||    
T  41232964 taaaagaccaacttattacaattaattgacttaaaggatctaagtggtatcaaaaaaacttaaa 41232901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 160 - 202
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  160 cgtatcacttacgtcatttaagttatttaattataacaagtta 202  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 303
Target Start/End: Original strand, 29531914 - 29531975
Alignment:
Q  243 tttttcataacacttaggtcgtttaagttatttaattgtaa-ctttaggtcccgaataactt 303  Q
    |||||| || || ||| ||| ||||||||||||||||||||  |||||||||||||||||||    
T  29531914 tttttcgtatcatttacgtcatttaagttatttaattgtaatttttaggtcccgaataactt 29531975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 38458805 - 38458899
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    ||||| ||| ||||| ||| ||| || ||||||||| ||  ||||||||||| ||||||||||||  |  ||||| |||||| ||||||||||||||    
T  38458805 ttaaatgactaacttattacaataaaataacttaaaagatataagtggtacgaaaaaaacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 161 - 197
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  161 gtatcacttacgtcatttaagttatttaattataaca 197  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 398 - 494
Target Start/End: Complemental strand, 29531950 - 29531855
Alignment:
Q  398 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 494  Q
    |||||| ||||||||| ||| ||| || |||| |||||||||||| ||  ||||| |||||| ||||||||||||| ||| | |  |||||||||||    
T  29531950 aattaaataacttaaatgacgtaaatgatacg-aaaaaacttaaaggactaatttattacaattaaataacttaaatgacatctcatgtaatttaac 29531855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 237 - 473
Target Start/End: Original strand, 4558769 - 4559007
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    |||||||||||| ||||||||||||| ||||| |||||||||||||||||| ||| |  |||||||||||| ||||||||||| |||| |||||| |  |    
T  4558769 taagtatttttcgtaacacttaggtcttttaatttatttaattgtaacttttaggccatgaataacttgcatttttaagatctaaaatacctcaaatagt 4558868  T
Q  336 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggta-cgtaaa 433  Q
    ||| ||||||||||||| |||||||||||||||| |       |||||||| |||||||||| ||||||||||| ||||| |||||||| ||| |  |||    
T  4558869 tacggttaaatagcttaaaggacctaattggtacagacaaaacttaaaggaacaacttgttacaattaattaacataaagtacctaagttgtaccaaaaa 4558968  T
Q  434 aaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||| ||||||||| |||||| |||||||||||||    
T  4558969 aaacttaaa-gatcaatttattacaattaaataacttaaa 4559007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 241 - 492
Target Start/End: Original strand, 8198509 - 8198759
Alignment:
Q  241 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 339  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8198509 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8198606  T
Q  340 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 438  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8198607 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8198706  T
Q  439 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8198707 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8198759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 241 - 492
Target Start/End: Original strand, 8203269 - 8203519
Alignment:
Q  241 tatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttaca 339  Q
    |||||||| ||||||||||||  ||||||||||||||||| |||||| |||  || | |||||| || |||||||||||||||||||  || || ||||     
T  8203269 tatttttcttaacacttaggt--tttaagttatttaattgaaacttttaggctccaactaacttacatttttaagatctgaaatcccctaaattgttacg 8203366  T
Q  340 gttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaact 438  Q
    |||||||| |||| |||||||||||||||||        ||||||| ||||||| ||| ||||||||| |||||||||||||||||||||| ||||||||    
T  8203367 gttaaataacttaaaggacctaattggtacggaaaaaacttaaagggccaacttattacaattaattatcttaaaggacctaagtggtacggaaaaaact 8203466  T
Q  439 taaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||| || |||||| |||||| ||| ||||||||| || || |||| |||||||    
T  8203467 taaa-gaccaatttgttacaattaactaacttaaaggatttctggtataattta 8203519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 409 - 492
Target Start/End: Complemental strand, 45385921 - 45385838
Alignment:
Q  409 ttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    ||||||||| ||||||||||| |||||||||||| |  |||||| |||||| ||||||||||||| ||| ||||||||||||||    
T  45385921 ttaaaggacgtaagtggtacgaaaaaaacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 378 - 492
Target Start/End: Complemental strand, 4923542 - 4923428
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    ||||||||  ||||| ||| |||| |||||| ||||  |||||| ||||||| ||||||| |||||||||||||| ||| || |||| ||||||| ||||    
T  4923542 ttaaaggattaacttattacaatttattaacgtaaaaaacctaaatggtacggaaaaaacataaatgatcaatttattataattaaaaaacttaagagac 4923443  T
Q  478 ttatggtgtaattta 492  Q
     |  |||||||||||    
T  4923442 atccggtgtaattta 4923428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 42054059 - 42053964
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||| ||||||||| ||||||  ||||||||| ||||||||| ||   | |||||||||| ||| || || ||| ||||||||||||||||    
T  42054059 ttaaaggactaacttgttaaaattaaacaacttaaagaacctaagtgatataaacaaaacttaaaggattaacttattataactaaataacttaaa 42053964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Original strand, 6739472 - 6739554
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgt-aactttaggtcccgaataacttgcagttttaagatct 318  Q
    |||||||||||  ||||| ||||||| |||||||||||||||||| ||||||| | | | |||||||| || |||||||||||    
T  6739472 taagtattttttgtaacatttaggtcatttaagttatttaattgtaaactttaagcctctaataacttacatttttaagatct 6739554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 3289442 - 3289531
Alignment:
Q  384 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||| |||||||| | ||||| ||  |||||| |||  |||||||||||| || |||||| |||||| ||||||| |||||    
T  3289442 gaccaacttgttacaattaattcaattaaaagatttaagtgatacaaaaaaaacttaaaagaccaatttattacaattaaataatttaaa 3289531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Original strand, 42054042 - 42054102
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgta 282  Q
    |||||||||||  | |||||||||||| || |||||||||  |||||||||||||||||||    
T  42054042 aacaagttagtcctttaagtatttttcctatcacttaggttctttaagttatttaattgta 42054102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 424 - 490
Target Start/End: Complemental strand, 4558745 - 4558680
Alignment:
Q  424 ggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 490  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||| ||| |||| ||||||||    
T  4558745 ggtacgaaaaaaacttaaa-gaccaatttattacaattaaataacttaagagaattatcgtgtaatt 4558680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 4923553 - 4923607
Alignment:
Q  250 taacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 303  Q
    ||||||||||||  ||||||||||||||||| ||| ||||||| |||||||||||    
T  4923553 taacacttaggtactttaagttatttaattgcaacttttaggttccgaataactt 4923607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 8198477 - 8198419
Alignment:
Q  415 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8198477 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 473
Target Start/End: Complemental strand, 8203237 - 8203179
Alignment:
Q  415 gacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||||| |||||| |||||  | |||||| |||||| |||||||||||||    
T  8203237 gacctaagtggtacgaaaaaaatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 419 - 494
Target Start/End: Original strand, 32546464 - 32546538
Alignment:
Q  419 taagtggtacgtaaaa-aacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 494  Q
    ||||||||||| |||| |||||||||||||||||| |||| | |||| ||||||||  || | ||||||||||||||    
T  32546464 taagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaa--acctctggtgtaatttaac 32546538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 380 - 440
Target Start/End: Original strand, 28358958 - 28359018
Alignment:
Q  380 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaactta 440  Q
    ||||||||||| ||||| | ||||||||||||||||| |||| || |||| | ||||||||    
T  28358958 aaaggaccaacctgttacatttaattaacttaaaggaactaattgatacgaacaaaactta 28359018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 5e-42; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 237 - 479
Target Start/End: Complemental strand, 16419837 - 16419591
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    ||||||||| || ||||||||||||| ||||||||||||||||| ||| |||||| ||| |||||||| || || |||||||| ||||||||||| || |    
T  16419837 taagtatttgtcgtaacacttaggtcttttaagttatttaattgaaacttttaggccccaaataacttacatttctaagatctaaaatccctcaaattgt 16419738  T
Q  336 tacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac---gtaa 432  Q
    ||| |||||||| |||| |||| | ||||||||||       ||||| ||||||||||||| |||||||||||||||| || |||| ||||||     ||    
T  16419737 tacggttaaataacttaaaggatcaaattggtacgaaaaaacttaaatgaccaacttgttacaattaattaacttaaatgatctaattggtacaaaagaa 16419638  T
Q  433 aaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 479  Q
    || |||| |||||||||||| |||||| ||||||||||||| |||||    
T  16419637 aatacttcaatgatcaatttgttacaattaaataacttaaaggactt 16419591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 196238 - 196111
Alignment:
Q  238 aagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttctt 336  Q
    |||||| ||||  |||||||||||| |||||||||||||||||||||||| | | || ||||||||| || ||||||||| |||||| |||||| || ||    
T  196238 aagtatatttcgaaacacttaggtc-tttaagttatttaattgtaacttttaagccctgaataacttacatttttaagatatgaaatacctcaaattgtt 196140  T
Q  337 acagttaaatagcttagaggacctaattg 365  Q
    || ||||| || |||| ||||||||||||    
T  196139 acggttaagtaacttaaaggacctaattg 196111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 381 - 492
Target Start/End: Original strand, 12458392 - 12458504
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 479  Q
    ||||||||||||||| ||||| ||||||||||||||||||||  |||| | ||||||||||||  | ||| || |||||| ||||||||||||| |||||    
T  12458392 aaggaccaacttgttttaatttattaacttaaaggacctaagaagtacgggaaaaaacttaaagtaccaaattgttacaattaaataacttaaaggactt 12458491  T
Q  480 atggtgtaattta 492  Q
     | ||||||||||    
T  12458492 ctagtgtaattta 12458504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 473
Target Start/End: Complemental strand, 33547889 - 33547750
Alignment:
Q  335 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaa- 433  Q
    ||||| ||||||| |||| ||||||||| ||||| |       ||||| ||| ||||||||| |||||||||||||||||||| ||||||| ||  |||     
T  33547889 ttacaattaaataacttaaaggacctaaatggtatgaaaaaacttaaaagacaaacttgttacaattaattaacttaaaggacataagtggaacaaaaat 33547790  T
Q  434 aaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||| || |||||| |||||| |||||||||||||    
T  33547789 aaacttaaaggaccaatttgttacaattaaataacttaaa 33547750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 17411121 - 17411270
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtc-ccgaataacttgcagttttaagatctga 320  Q
    |||||||||||  | ||| |||||||| ||| || || ||| ||| ||||||||||||||||| ||  ||| ||||||||||| || |||||||||||||    
T  17411121 aacaagttagtcttttaaatatttttcgtaatacataagtcttttgagttatttaattgtaacgtttagtctccgaataacttacatttttaagatctga 17411220  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 370  Q
    |||||| ||| || ||||  ||||||| |||| || || |||||||||||    
T  17411221 aatcccccaaattattacgattaaataacttaaagtacataattggtacg 17411270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 28477509 - 28477384
Alignment:
Q  240 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 338  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  28477509 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacatttttaagatctaaaatcgcctaaattattac 28477410  T
Q  339 agttaaatagcttagaggacctaatt 364  Q
    |||| |||| |||| || ||||||||    
T  28477409 agttcaataacttaaagaacctaatt 28477384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 29789961 - 29789836
Alignment:
Q  240 gtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttac 338  Q
    ||||||||||||||| ||||||  ||||| ||||||||| |||| ||| ||| |||||||||||| || ||||||||||| ||||| |  || || ||||    
T  29789961 gtatttttcataacagttaggttctttaaattatttaatcgtaatttttaggccccgaataacttacaattttaagatctaaaatcgcctaaattattac 29789862  T
Q  339 agttaaatagcttagaggacctaatt 364  Q
    |||| |||| |||| || ||||||||    
T  29789861 agttcaataacttaaagaacctaatt 29789836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 222 - 411
Target Start/End: Original strand, 7004200 - 7004390
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 320  Q
    |||||||||||  | |||||||||||  || |||||| ||| ||||||||||||||||| ||| ||||   || |||||||||  | ||||||||||| |    
T  7004200 aacaagttagtcctttaagtattttttgtatcacttatgtc-tttaagttatttaattgcaacatttaaaccctgaataacttatacttttaagatctaa 7004298  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaactta 411  Q
    |||  ||||| || |||| |||||||| |||| || ||||||||||||| |        ||||||| |||||||||||||||||| ||||||    
T  7004299 aatttctcaaattgttacggttaaataacttaaagaacctaattggtacagagaaaacataaaggatcaacttgttataattaataaactta 7004390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  162 tatcacttacgtcatttaagttatttaattataacaagttagt 204  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 10544282 - 10544376
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    ||||| || |||||| ||||||||||||||||||| ||| |||| | ||||| ||||||||||||   ||||||| |||||  ||||||||||||||    
T  10544282 ttaaatgatcaacttattataattaattaacttaatggatctaactagtacgaaaaaaacttaaa--gtcaatttgttacagataaataacttaaaa 10544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 352
Target Start/End: Complemental strand, 32548235 - 32548138
Alignment:
Q  256 ttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagctta 352  Q
    ||||||| ||||||||||||||||||||| ||||| ||||||||| ||| || ||||||||| | |||| || ||| || |||| |||||||| ||||    
T  32548235 ttaggtcctttaagttatttaattgtaacttttagatcccgaatagcttacatttttaagatttaaaataccgcaaattgttacggttaaataactta 32548138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 442
Target Start/End: Complemental strand, 7202356 - 7202300
Alignment:
Q  386 ccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    ||||| ||||| ||||||||||| |||||||||||| ||||||| ||||||||||||    
T  7202356 ccaacatgttacaattaattaacataaaggacctaaatggtacgaaaaaaacttaaa 7202300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 326
Target Start/End: Original strand, 33547849 - 33547933
Alignment:
Q  243 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccc 326  Q
    ||||||||| || ||||||| ||||||||||||||||||||| |||| ||  ||||||||||  | ||||||| |||||||||||    
T  33547849 tttttcataccatttaggtcctttaagttatttaattgtaacttttaagtttcgaataacttaaatttttaaggtctgaaatccc 33547933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 265 - 370
Target Start/End: Complemental strand, 7202419 - 7202313
Alignment:
Q  265 ttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaat 363  Q
    |||||||||||||||||||| |||||| ||||||||||||  | ||||||||||| ||||| | |||  | ||||| |||| || | || |||||||||     
T  7202419 ttaagttatttaattgtaacttttaggccccgaataacttaaatttttaagatctaaaatctcccaacatgttacaattaattaacataaaggacctaaa 7202320  T
Q  364 tggtacg 370  Q
    |||||||    
T  7202319 tggtacg 7202313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 318
Target Start/End: Original strand, 10544136 - 10544210
Alignment:
Q  245 tttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatct 318  Q
    |||| ||||||||||||| ||||||||| ||||||||||| ||||||||  |||||| || || |||||||||||    
T  10544136 tttcgtaacacttaggtcatttaagttagttaattgtaacttttaggtcttgaataatttacatttttaagatct 10544210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 264 - 364
Target Start/End: Complemental strand, 29693383 - 29693282
Alignment:
Q  264 tttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaa 362  Q
    ||||| ||||||||| |||||||| ||| |||||||||||| || ||||||||||| ||||| |  || || |||||||| |||| |||| || ||||||    
T  29693383 tttaaattatttaatcgtaacttttaggacccgaataacttacatttttaagatctaaaatcgcctaaattattacagttcaataacttaaagaacctaa 29693284  T
Q  363 tt 364  Q
    ||    
T  29693283 tt 29693282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 378 - 475
Target Start/End: Complemental strand, 31314609 - 31314513
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 475  Q
    ||||| ||| || ||||||||||||| |||||||||  || |||||| |||  ||||||||||||||||||| || ||| || ||||||||| |||||    
T  31314609 ttaaatgactaatttgttataattaaataacttaaaa-acataagtgatactgaaaaaacttaaatgatcaacttgttataattaaataactcaaaag 31314513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  161 gtatcacttacgtcatttaagttatttaattataacaagttagt 204  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 347
Target Start/End: Complemental strand, 9405362 - 9405267
Alignment:
Q  253 cacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaata 347  Q
    ||||||| || |||||||||||||||||||| || ||  | ||||||||||   | |||||||||||||||| |||||| || |||| ||||||||    
T  9405362 cacttagatcctttaagttatttaattgtaatttataaatgccgaataactaaaatttttaagatctgaaattcctcaaattgttacggttaaata 9405267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 473
Target Start/End: Complemental strand, 196135 - 196063
Alignment:
Q  400 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||| ||||||||||||||||| || |||  ||||||||||||| |||||||| |||||| ||| ||| |||||    
T  196135 ttaagtaacttaaaggacctaattgatactgaaaaaacttaaat-atcaatttgttacaattaattaatttaaa 196063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 33547785 - 33547744
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacct 419  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  33547785 ttaaaggaccaatttgttacaattaaataacttaaaggacct 33547744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 473
Target Start/End: Complemental strand, 33547890 - 33547811
Alignment:
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||| |||||| ||||||||||||||||| ||||| | |||||||||||| ||  || || |||||| ||| |||||||||    
T  33547890 gttacaattaaataacttaaaggacctaaatggtatg-aaaaaacttaaaagacaaacttgttacaattaattaacttaaa 33547811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 1e-39; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 222 - 492
Target Start/End: Original strand, 41331168 - 41331439
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctga 320  Q
    |||||||||||  | ||| ||||||||||| |||||||||| |||||||||||||||| ||||||| ||||  ||||||||||  | ||||| |||||      
T  41331168 aacaagttagtagtttaaatatttttcatagcacttaggtc-tttaagttatttaattataacttttaggtatcgaataacttcaatttttaggatctag 41331266  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacct 419  Q
    ||||||  || || |||| |||||||| |||| | ||||| ||||||||         |||||| ||||||||||||||||| ||||||||||| || ||    
T  41331267 aatccccaaaattgttacggttaaataacttaaatgacctcattggtacatgaaaaacttaaagaaccaacttgttataatttattaacttaaatgagct 41331366  T
Q  420 aagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    | ||||||||  ||||||||||||||||||||| |||||| ||||||||||||| |||||||| | |||||||    
T  41331367 aggtggtacgagaaaaacttaaatgatcaatttattacaattaaataacttaaatgacttatgatataattta 41331439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 237 - 492
Target Start/End: Original strand, 18128375 - 18128632
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    |||||||| ||| |||||||||| || ||||| || |||||||||||||||    ||  ||||||||| || |||||||||||||||| |  ||| || |    
T  18128375 taagtattcttcgtaacacttagatcctttaaattttttaattgtaacttttaaaccttgaataacttacatttttaagatctgaaattcgccaaattgt 18128474  T
Q  336 tacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 434  Q
    ||  |||||||| |||| |||| |||||| |||||        |||||| |||||||| ||| ||||||||||||||||| |||||||| ||||| ||||    
T  18128475 tatggttaaataacttaaaggatctaattcgtacgaaaaaaaattaaagcaccaacttattacaattaattaacttaaagaacctaagtagtacg-aaaa 18128573  T
Q  435 aactt-aaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    ||||| ||| || |||||| |||||  ||||||| ||||| ||| ||||||||||||||    
T  18128574 aacttaaaaggaccaatttattacatttaaataatttaaaggacctatggtgtaattta 18128632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 30551947 - 30552040
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||||||||||||||| |||| ||||||||||| ||||||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  30551947 aaggaccaacttgttacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 30552040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 381 - 474
Target Start/End: Original strand, 6589558 - 6589651
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||||||||||| ||| |||| ||||||||||| ||||||||||||||  |||||||||||| ||||||||| |||||| ||||| ||||||||    
T  6589558 aaggaccaacttattacaattgattaacttaaatgacctaagtggtaccaaaaaaacttaaaggatcaatttattacaattaaattacttaaaa 6589651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 398 - 477
Target Start/End: Complemental strand, 12422123 - 12422044
Alignment:
Q  398 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    |||||||| ||||||||||||||||||||| | ||||||||||||||| |||||| |||||| | |||||||||||||||    
T  12422123 aattaatttacttaaaggacctaagtggtatgaaaaaaacttaaatgaccaatttattacaatttaataacttaaaagac 12422044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 387 - 494
Target Start/End: Original strand, 32804629 - 32804736
Alignment:
Q  387 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgt 486  Q
    |||||||||  |||||||||||||||| ||| ||||| ||| | ||||||| |||| ||||||||| |||||| |||||| | |||||||||| ||||||    
T  32804629 caacttgttgcaattaattaacttaaatgacttaagttgtatgaaaaaaacctaaaagatcaatttattacaattaaatatcctaaaagacttgtggtgt 32804728  T
Q  487 aatttaac 494  Q
    ||||||||    
T  32804729 aatttaac 32804736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 1532285 - 1532197
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||||||||||| |||| |||||||||||||||||| |||||  ||||||  ||||||||||| || |||||| |||||||||||||    
T  1532285 accaacttgttatagttaaataacttaaaggacctaagaggtacaaaaaaaatgtaaatgatcaacttattacaattaaataacttaaa 1532197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 484
Target Start/End: Complemental strand, 20389822 - 20389633
Alignment:
Q  296 aataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgtt 395  Q
    |||||||| || ||||||||||| |||| |  ||| || ||||||||||||| |||| |||| |||||| |||||        | || ||||||||||||    
T  20389822 aataacttacatttttaagatctaaaattcgccaaattgttacagttaaataacttaaaggatctaattcgtacgaaaaaaacttaaagaccaacttgtt 20389723  T
Q  396 ataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 484  Q
    | ||||||||||||||||| | |||||| |||||  ||||||||||||  |  | ||| |||||  ||||||||||||||||| ||||||    
T  20389722 acaattaattaacttaaagcatctaagtagtacgaaaaaaaacttaaagaactactttgttacatttaaataacttaaaagacctatggt 20389633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 28003341 - 28003434
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||||| |||||||||| | |||||||||||||||||||||| ||||||| ||||||||| || |||||| || |||||| ||||||| |||||    
T  28003341 ttaaaggatcaacttgttacatttaattaacttaaaggacctaattggtacg-aaaaaactt-aacgatcaacttgttacaattaaataatttaaa 28003434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 323
Target Start/End: Original strand, 48447315 - 48447402
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat 323  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||| |||| | ||  |||||||| || ||||||||||| ||||    
T  48447315 taagtatttttcgtaacgcttaggtcctttaagttatttaattgtaacttttatgcccaaaataacttacatttttaagatctaaaat 48447402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 473
Target Start/End: Complemental strand, 5755685 - 5755594
Alignment:
Q  380 aaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||||||| ||||||||||| |||| ||  |||||||||||  ||||| ||||| |  |||||| |||||| |||||||||||||    
T  5755685 aaaggaccaacttgttacaattaattaacataaatgatttaagtggtacg--aaaaaattaaagggccaatttgttacaattaaataacttaaa 5755594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 326
Target Start/End: Original strand, 12264801 - 12264890
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaaatccc 326  Q
    |||||||||||| || |||||||||| || ||||||||||| ||||||||| || |  ||||||||| || ||| ||||| |||||||||    
T  12264801 taagtatttttcgtaccacttaggtctttcaagttatttaagtgtaacttttggccatgaataacttacattttaaagatttgaaatccc 12264890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 12422342 - 12422262
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagat 316  Q
    |||||||| ||  |||||||||  || ||||||||||||||||||||| |||||||||||||||||||  | |||||||||    
T  12422342 taagtattgtttgtaacacttaaatcctttaagttatttaattgtaacttttaggtcccgaataacttatacttttaagat 12422262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 390 - 494
Target Start/End: Original strand, 12422352 - 12422455
Alignment:
Q  390 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 489  Q
    ||||||| |||||| ||||||||| ||| |||||| |||  |||||||||||| ||| ||||| |||||| |||||||||||||  | ||  ||||||||    
T  12422352 cttgttaaaattaaataacttaaaagacgtaagtgataca-aaaaaacttaaaggatgaatttgttacaattaaataacttaaagaaattccggtgtaat 12422450  T
Q  490 ttaac 494  Q
    |||||    
T  12422451 ttaac 12422455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 494
Target Start/End: Original strand, 21920965 - 21921164
Alignment:
Q  294 cgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaaggaccaactt 392  Q
    |||||||||| || ||||||| ||| |||| || ||| || |||  |||||||| |||| ||||||||||| |||||        |||||  | ||||||    
T  21920965 cgaataacttacatttttaaggtctaaaattccccaaatttttatggttaaataacttaaaggacctaattagtacggaaaaaacttaaataaacaactt 21921064  T
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||| | ||||||||||||||| || |||||||||   |||||||||||||||  ||||  ||| |  ||||||||||||| |||||||| |||||||||    
T  21921065 gttacagttaattaacttaaag-acataagtggtaaa-aaaaaacttaaatgacaaattagttatagttaaataacttaaatgacttatgatgtaattta 21921162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 288
Target Start/End: Original strand, 28002279 - 28002330
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttta 288  Q
    |||||| |||||||| |||||||||| |||||||| ||||||||||||||||    
T  28002279 taagtacttttcataccacttaggtcctttaagttgtttaattgtaacttta 28002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 459
Target Start/End: Complemental strand, 32918595 - 32918529
Alignment:
Q  394 ttataattaattaacttaaaggacctaagtggtacgtaa-aaaacttaaatgatcaatttcttacaa 459  Q
    ||||||||||||||||||||||| ||||||| |||| || |||||| ||| ||||||||| ||||||    
T  32918595 ttataattaattaacttaaaggagctaagtgatacgaaataaaactcaaaagatcaatttattacaa 32918529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 1532441 - 1532501
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  1532441 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 1532501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 398 - 474
Target Start/End: Complemental strand, 6586938 - 6586862
Alignment:
Q  398 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||| ||||||||||| ||||||||| ||||  |||||| ||||  ||||||||| |||||| ||||| ||||||||    
T  6586938 aattgattaacttaaatgacctaagtagtaccaaaaaaatttaagagatcaatttattacaattaaattacttaaaa 6586862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 32857850 - 32857890
Alignment:
Q  243 tttttcataacacttaggtcgtttaagttatttaattgtaa 283  Q
    |||||| ||||||||||||| ||||||||||||||||||||    
T  32857850 tttttcgtaacacttaggtcttttaagttatttaattgtaa 32857890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 472
Target Start/End: Complemental strand, 48447362 - 48447283
Alignment:
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaa 472  Q
    |||| |||||| |||||||||||||||||| | |||| |||| |||||||  |  ||||| |||||| ||||||||||||    
T  48447362 gttacaattaaataacttaaaggacctaagcgttacgaaaaatacttaaagtactaatttgttacaattaaataacttaa 48447283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  161 gtatcacttacgtcatttaagttatttaattataacaag 199  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 436
Target Start/End: Complemental strand, 5762753 - 5762696
Alignment:
Q  379 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa 436  Q
    ||||| |||||||||||| ||||||||||| || |  |||||||||||||| ||||||    
T  5762753 taaagaaccaacttgttacaattaattaacatatattacctaagtggtacggaaaaaa 5762696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 28002235 - 28002283
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagt 270  Q
    |||||||||||  | ||||||||||||||| |||||||||| |||||||    
T  28002235 aacaagttagtcctttaagtatttttcataccacttaggtcatttaagt 28002283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 172 - 204
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  172 gtcatttaagttatttaattataacaagttagt 204  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 492
Target Start/End: Original strand, 45477966 - 45478070
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 487  Q
    ||||||||| || | ||||||||| ||| |||||||| ||   ||||||  | |||||||||||| |||||| ||||||| ||||||||  |  ||||||    
T  45477966 aacttgttacaacttattaacttatagggcctaagtgataaaaaaaaaaaattaatgatcaatttattacaattaaataatttaaaagatatgaggtgta 45478065  T
Q  488 attta 492  Q
    |||||    
T  45478066 attta 45478070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 222 - 353
Target Start/End: Original strand, 22519386 - 22519518
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 320  Q
    |||||||||||  | |||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||| || |||||||||||||    
T  22519386 aacaagttagtcctttaagtatttttcgtaacacttaggtcctttaagttatttaattgtaacttttaggtcccaaataacttacatttttaagatctga 22519485  T
Q  321 aatccctcaatttcttacagttaaatagcttag 353  Q
    |||||| ||| ||  ||| |||||||| |||||    
T  22519486 aatcccccaaattgctacggttaaataacttag 22519518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 222 - 473
Target Start/End: Original strand, 31095124 - 31095377
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 320  Q
    ||||||||| | || |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||||||  ||||||||| || |||||||||||||    
T  31095124 aacaagttaatcatttaagtattgtttgtaacacttaggttctttaagttatttaattgtaacttttaggtcttgaataacttacatttttaagatctga 31095223  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 420  Q
    |||||   || ||  ||  || |||||||||| | ||||| ||||||| |       ||| ||||  ||||||||| || ||||||||||||| ||||||    
T  31095224 aatcctaaaaattgatatggtaaaatagcttaaatgaccttattggtaggaaaaaacttataggattaacttgttacaactaattaacttaaaagaccta 31095323  T
Q  421 agtggtacgtaaaaaacttaaat-gatcaatttcttacaactaaataacttaaa 473  Q
    | ||||||| ||| || |||| | ||  ||||| |||||| |||||||||||||    
T  31095324 aatggtacgaaaataatttaagtggacaaatttattacaattaaataacttaaa 31095377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 492
Target Start/End: Original strand, 22519807 - 22519921
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga 476  Q
    |||||||| ||||||||||||||||||||||||||| |||||||||||||| | ||||||||| || || |||||| |||||| ||||||| || |||||    
T  22519807 ttaaaggatcaacttgttataattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataa-tttaaaga 22519905  T
Q  477 cttatggtgtaattta 492  Q
    | | ||||||||||||    
T  22519906 cctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 384 - 473
Target Start/End: Original strand, 48194394 - 48194483
Alignment:
Q  384 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||| | |||| |||||||||||||||||| |||||| ||||||| ||||||||||| || |||||| |||||||||||||    
T  48194394 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 48194483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 222 - 352
Target Start/End: Complemental strand, 49291335 - 49291205
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 321  Q
    ||||||||||| || ||||||||||| |||||| ||| ||| ||||||||||||||||||||||||    ||||| |||||| || ||| ||||||||||    
T  49291335 aacaagttagtcatttaagtattttttataacatttaagtcttttaagttatttaattgtaacttttaaacccgagtaacttacattttgaagatctgaa 49291236  T
Q  322 atccctcaatttcttacagttaaatagctta 352  Q
    || ||| || || ||||  ||||||| ||||    
T  49291235 attcctgaaattgttacgattaaataactta 49291205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 33617920 - 33618010
Alignment:
Q  400 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    ||||||||||||||||||||||| ||||||  ||||||||||| || |||||| |||||| ||||||||||||| ||| | | ||||||||||    
T  33617920 ttaattaacttaaaggacctaagcggtacg--aaaaacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 102
Target Start/End: Complemental strand, 16840946 - 16840857
Alignment:
Q  19 atacacctgaaatgaagaaaataa------cattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 102  Q
    ||||||||||||||||||||||||      |||||| ||||||||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840946 atacacctgaaatgaagaaaataataacaacattaaatgtatttagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 237 - 473
Target Start/End: Complemental strand, 20141983 - 20141745
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 334  Q
    |||||||||||| |||  |||| ||| |||||||| ||||||||||| ||| ||| ||  |||||||| || ||||||||||| |||| |||  || ||     
T  20141983 taagtatttttcgtaatgcttaagtc-tttaagttgtttaattgtaatttttaggcccataataacttacatttttaagatctaaaatacccaaaaatta 20141885  T
Q  335 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 434  Q
    |||| |||||||| |||| | ||||||||| |||||        | || ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  20141884 ttacggttaaataacttaaatgacctaattagtacgaataaaacttaaagaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 20141785  T
Q  435 a-acttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    | |||||||  | | | || |||||| |||||||||||||    
T  20141784 agacttaaagaacctacttattacaattaaataacttaaa 20141745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 22889674 - 22889586
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22889674 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22889586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 385 - 473
Target Start/End: Complemental strand, 22941338 - 22941250
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||||||||| |||| |||||||||||||| | ||| |||||  ||||||||| || || |||||| ||| || |||||||||||||    
T  22941338 accaacttgttacaatttattaacttaaaggatcaaagcggtacaaaaaaaactttaaggaccaatttattataattaaataacttaaa 22941250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  162 tatcacttacgtcatttaagttatttaattataacaagtta 202  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 398 - 473
Target Start/End: Original strand, 53769786 - 53769861
Alignment:
Q  398 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||| ||| ||||| ||||||||||||| | |||| ||||||||||| ||||| |||||| ||||||| |||||    
T  53769786 aattaaataatttaaaagacctaagtggtatgaaaaatacttaaatgattaatttattacaattaaataatttaaa 53769861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 388 - 494
Target Start/End: Complemental strand, 2323372 - 2323266
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 487  Q
    ||||||||| ||||||||||||| || || |||  ||||||  |||||||||||| |   ||||| |||||| ||||||| ||||| ||||| || ||||    
T  2323372 aacttgttacaattaattaacttgaaagaactacatggtaccaaaaaaacttaaagggctaatttgttacaattaaataatttaaaggacttttgatgta 2323273  T
Q  488 atttaac 494  Q
    |||||||    
T  2323272 atttaac 2323266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 405 - 479
Target Start/End: Original strand, 42676809 - 42676883
Alignment:
Q  405 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 479  Q
    ||||||||| |||||||||| |||| ||||||| |||| ||| || || |||||| ||| |||||||||||||||    
T  42676809 taacttaaatgacctaagtgatacgaaaaaaacataaaggattaacttgttacaattaattaacttaaaagactt 42676883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 51580140 - 51580077
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt 287  Q
    |||||||||||| | |||||||||||| ||||| ||||||| |||| |||||||||||||||||||    
T  51580140 aacaagttagttct-taagtatttttcgtaacatttaggtc-tttacgttatttaattgtaacttt 51580077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 388 - 471
Target Start/End: Original strand, 34013780 - 34013861
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactta 471  Q
    ||||| ||||| |||||||| ||||||||| ||||| ||| | |||||  ||||||||| ||||| |||||| |||||||||||    
T  34013780 aacttattatatttaattaatttaaaggacttaagtagtatgaaaaaa--ttaaatgattaatttgttacaattaaataactta 34013861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 468
Target Start/End: Complemental strand, 22519448 - 22519373
Alignment:
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataac 468  Q
    |||| |||||| |||||||||||||||||||| |||| |||| ||||||| ||  || || |||||| ||||||||    
T  22519448 gttacaattaaataacttaaaggacctaagtgttacgaaaaatacttaaaggactaacttgttacaattaaataac 22519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 474
Target Start/End: Original strand, 34717567 - 34717660
Alignment:
Q  379 taaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||| ||| ||||||||  |||||||||||||||| ||| || ||| |||| ||||||||||||| |  ||||| |||||| ||||||||||||||    
T  34717567 taaaagacaaacttgtttcaattaattaacttaaaagacttaggtgatacg-aaaaaacttaaat-acaaatttattacaattaaataacttaaaa 34717660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 378 - 429
Target Start/End: Original strand, 40070309 - 40070360
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg 429  Q
    |||||||| |||||||||||| |||||||||||||| || ||||||| ||||    
T  40070309 ttaaaggatcaacttgttatatttaattaacttaaatgatctaagtgatacg 40070360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 442
Target Start/End: Complemental strand, 31095131 - 31095078
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||||||| ||||||||||||| |||||| || | ||||||||||||    
T  31095131 aacttgttataattaaataacttaaaggacgtaagtgatatg-aaaaaacttaaa 31095078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 279
Target Start/End: Complemental strand, 53769828 - 53769786
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaatt 279  Q
    ||||||||||||||| |||||||||| ||||| ||||||||||    
T  53769828 taagtatttttcataccacttaggtcttttaaattatttaatt 53769786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 378 - 419
Target Start/End: Complemental strand, 22519354 - 22519313
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacct 419  Q
    ||||||||||| | |||||||||||| |||||||||||||||    
T  22519354 ttaaaggaccagcatgttataattaactaacttaaaggacct 22519313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 48194239 - 48194179
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||||||| | |||| ||||||||||  | ||||||||||| ||||||||||||    
T  48194239 aaggaccaacttgttacagttaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 48194179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 405 - 477
Target Start/End: Original strand, 22519774 - 22519846
Alignment:
Q  405 taacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    ||||||||| ||||||| || |||  |||||||||||| |||||| || ||| || ||| |||||||||||||    
T  22519774 taacttaaatgacctaattgatacagaaaaaacttaaaggatcaacttgttataattaattaacttaaaagac 22519846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 393 - 473
Target Start/End: Complemental strand, 31095186 - 31095106
Alignment:
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||| |||||| |||||||||| ||||||||| |||  | || ||||||||||| || || ||| || |||||||||||||    
T  31095186 gttacaattaaataacttaaagaacctaagtgttacaaacaatacttaaatgattaacttgttataattaaataacttaaa 31095106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 388 - 452
Target Start/End: Complemental strand, 55368844 - 55368780
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaattt 452  Q
    ||||| ||| || ||| ||| ||||||||  ||| ||||||| ||||||||||||||||||||||    
T  55368844 aacttattacaaataaataatttaaaggatataaatggtacgaaaaaaacttaaatgatcaattt 55368780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 356 - 494
Target Start/End: Original strand, 3866 - 4003
Alignment:
Q  356 gacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttctt 455  Q
    |||||||||||||||       ||||||||||||||||||| ||| ||||||||||||| |||| ||||||| | ||| |||||||||||||||||| ||    
T  3866 gacctaattggtacgaaaaaacttaaaggaccaacttgttacaatcaattaacttaaag-acctcagtggtaggaaaataacttaaatgatcaatttatt 3964  T
Q  456 acaactaaataacttaaaagacttatggtgtaatttaac 494  Q
    |||| |||||||| |||| ||||| ||||||||||||||    
T  3965 acaattaaataacataaatgacttctggtgtaatttaac 4003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 4e-27; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 473
Target Start/End: Original strand, 2277209 - 2277295
Alignment:
Q  387 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||||||| |||||||||||||||||||||||||||||||  |||||||||||| ||||||||| |||||| |||||||||||||    
T  2277209 caacttgttacaattaattaacttaaaggacctaagtggtacaaaaaaaacttaaaggatcaatttgttacaattaaataacttaaa 2277295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 394 - 474
Target Start/End: Complemental strand, 27533069 - 27532989
Alignment:
Q  394 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||||||||| ||||||||||||| |||||||||| ||||||||||||| ||||||||| |||||| ||||||||||||||    
T  27533069 ttataattaaataacttaaaggacgtaagtggtacataaaaaacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 37064689 - 37064768
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 457  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||| ||||| ||||    
T  37064689 ttaaaggaccaacttgttataattaattaacttaaaggacttaagtggtgcgaaaaaaacttaattgattaatttattac 37064768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 390 - 492
Target Start/End: Complemental strand, 15907790 - 15907689
Alignment:
Q  390 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaat 489  Q
    ||||||||||||||||||||||||| |  ||||||||||| |||||||||||| || |||||| | |||| ||||||||||||| || || |||||||||    
T  15907790 cttgttataattaattaacttaaagaatataagtggtacgaaaaaaacttaaa-gaccaatttatcacaagtaaataacttaaaggatttctggtgtaat 15907692  T
Q  490 tta 492  Q
    |||    
T  15907691 tta 15907689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 378 - 492
Target Start/End: Original strand, 15907944 - 15908058
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||| |  ||||| |||||  |||||| |||||| ||     
T  15907944 ttaaaggatcaacttgttataattaattaacctaaaaaacctaagtggtatgaaaaaaacttaaataactaatttattacagttaaatatcttaaaggat 15908043  T
Q  478 ttatggtgtaattta 492  Q
    || ||||||||||||    
T  15908044 ttttggtgtaattta 15908058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 222 - 474
Target Start/End: Complemental strand, 2510263 - 2510015
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcc-cgaataacttgcagttttaagatctga 320  Q
    |||||||||||| | ||| |||||||  |||||||||| || |||||||||||||| ||||| |||  | || |||||||||| || |||||| || |||    
T  2510263 aacaagttagttctttaattattttttgtaacacttagctcctttaagttatttaagtgtaatttttagaccacgaataacttacatttttaaaatatga 2510164  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggaccta 420  Q
    |||| ||||| || || || |||| || |||| |||| |||||| |||||       |||||||| ||| |||||  |||||||||||||    ||||||    
T  2510163 aatctctcaaattgttgcaattaagtaacttaaaggatctaatttgtacggaaaaacttaaaggaacaatttgttgcaattaattaactt----gaccta 2510068  T
Q  421 agtggtacgtaaaaaa-cttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    ||||||| | |||||| | ||||  | |||||| |||||| ||||||||||||||    
T  2510067 agtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaa 2510015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 410 - 492
Target Start/End: Original strand, 12807666 - 12807748
Alignment:
Q  410 taaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||||||||||||||||| |||||||| |||||  |||||||| | |||| ||||||||||||||||  | ||||||||||||    
T  12807666 taaaggacctaagtggtatgtaaaaaatttaaaaaatcaatttataacaattaaataacttaaaagatctctggtgtaattta 12807748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 222 - 352
Target Start/End: Original strand, 3806871 - 3807000
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtcccgaataacttgcagttttaagatctgaa 321  Q
    ||||||||||| || |||||||||||| || |||||||||| ||| | |||||||||| ||| |||  | || || |||||| || ||||||||| ||||    
T  3806871 aacaagttagtcatttaagtatttttcgtagcacttaggtccttttaattatttaattataatttttagccctgagtaacttacatttttaagatatgaa 3806970  T
Q  322 atccctcaatttcttacagttaaatagctta 352  Q
    ||  ||||| || ||||||||||||| ||||    
T  3806971 atatctcaa-ttgttacagttaaataactta 3807000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 162 - 207
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  162 tatcacttacgtcatttaagttatttaattataacaagttagttat 207  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 477
Target Start/End: Original strand, 32566875 - 32566969
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    |||||| | ||||||| ||||||| |||||||| ||||||| | |||| |||||  | |||| ||||||||||||| ||  ||||||||||||||||    
T  32566875 aaggactagcttgttacaattaataaacttaaatgacctaaatagtacataaaa--cctaaaggatcaatttcttataataaaataacttaaaagac 32566969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 387 - 475
Target Start/End: Original strand, 2967707 - 2967794
Alignment:
Q  387 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag 475  Q
    ||||||||||||||||||||| |||||||| |||||| | | | ||||||||||||  | |||||| |||  | |||||||||||||||    
T  2967707 caacttgttataattaattaatttaaaggatctaagtagaaggaaaaaaacttaaa-aaacaatttgttaggattaaataacttaaaag 2967794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 3806998 - 3807091
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||| || ||||||||| |||||||||||||||| ||| ||||| |||  ||||||||||| | || |||||| |||| | ||||||| |||||    
T  3806998 ttaaagtactaacttgttaaaattaattaacttaaaagacataagttgta--taaaaaacttagaggaccaatttgttactattaaataatttaaa 3807091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 369
Target Start/End: Complemental strand, 12190002 - 12189869
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 334  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12190002 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12189903  T
Q  335 ttacagttaaatagcttagaggacctaattggtac 369  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12189902 t-acagttaaataacttaaatgacctaattggtac 12189869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 369
Target Start/End: Complemental strand, 12434430 - 12434297
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccc-tcaatttc 334  Q
    ||||||||||   ||||||||||||  ||||| |||||||||||||||||| ||  ||| |||| ||| |  ||| |||||||||||| || | |||||     
T  12434430 taagtattttctgtaacacttaggttctttaatttatttaattgtaacttttagacccctaatatcttacgttttcaagatctgaaattccgttaatttg 12434331  T
Q  335 ttacagttaaatagcttagaggacctaattggtac 369  Q
    | ||||||||||| |||| | ||||||||||||||    
T  12434330 t-acagttaaataacttaaatgacctaattggtac 12434297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 457
Target Start/End: Original strand, 45445141 - 45445210
Alignment:
Q  387 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 457  Q
    ||||||||||| ||||| ||| ||| ||||||||| ||||||| |||||||||||| || |||||| ||||    
T  45445141 caacttgttatgattaaataatttacaggacctaattggtacg-aaaaaacttaaacgaccaatttattac 45445210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 404 - 496
Target Start/End: Original strand, 41123 - 41216
Alignment:
Q  404 ttaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaaga-cttatggtgtaatttaacat 496  Q
    ||||||||||  || ||||||||||  |||||||||||| ||  ||||| |||||| ||||||| ||||| || ||  ||||||||||||||||    
T  41123 ttaacttaaataacataagtggtacacaaaaaacttaaaggactaatttgttacaattaaataatttaaaggatctcttggtgtaatttaacat 41216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 8453098 - 8453163
Alignment:
Q  223 acaagttagttatgtaagtatttttcataacacttaggt-cgtttaagttatttaattgtaacttt 287  Q
    |||||||||| || ||||||||| ||||||||||||  | | |||||||||||| |||||||||||    
T  8453098 acaagttagtcatttaagtatttctcataacacttacatccttttaagttatttgattgtaacttt 8453163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 445
Target Start/End: Complemental strand, 32566769 - 32566724
Alignment:
Q  400 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatga 445  Q
    |||| ||||||||||||| ||||||| ||| |||||||||||||||    
T  32566769 ttaaataacttaaaggacttaagtggcacgaaaaaaacttaaatga 32566724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 470
Target Start/End: Complemental strand, 3806932 - 3806856
Alignment:
Q  394 ttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataactt 470  Q
    |||||||||| ||| | |||||||||||||| |||| |||| ||||||||||  || || |||||  ||||||||||    
T  3806932 ttataattaaataattaaaaggacctaagtgctacgaaaaatacttaaatgactaacttgttacagttaaataactt 3806856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 32566867 - 32566752
Alignment:
Q  243 tttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagt 341  Q
    ||||||||||||||||  || |||| |||||| ||||| ||| |||||||| ||||||||||  | ||||||||| ||||||| |  || || |||| ||    
T  32566867 tttttcataacacttacatcttttacgttattgaattgaaacttttaggtctcgaataacttata-ttttaagatttgaaatctcctaaattgttacggt 32566769  T
Q  342 taaatagcttagaggac 358  Q
    |||||| |||| |||||    
T  32566768 taaataacttaaaggac 32566752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 237 - 473
Target Start/End: Complemental strand, 363853 - 363615
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaat-ccctcaatttc 334  Q
    |||||||||||| |||  |||| ||| |||||||| |||||||||||| |||||| || ||||||||| || ||||||||||| |||| |||  || ||     
T  363853 taagtatttttcgtaatgcttaagtcatttaagttgtttaattgtaacttttaggcccagaataacttacatttttaagatctaaaatacccaaaaattg 363754  T
Q  335 ttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 434  Q
    |||| |||||||| |||| | ||||||||| |||||       ||||| ||||||||||||| ||||||||||| ||||| ||||||||| |||  ||||    
T  363753 ttacggttaaataacttaaatgacctaattagtacgaaaaaacttaaa-gaccaacttgttacaattaattaacataaagaacctaagtgatacaaaaaa 363655  T
Q  435 a-acttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    | |||||||  | | |||| |||||| |||||||||||||    
T  363654 agacttaaagaacctatttattacaattaaataacttaaa 363615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 472
Target Start/End: Original strand, 47726457 - 47726693
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47726457 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47726556  T
Q  336 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 434  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47726557 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47726656  T
Q  435 aacttaaatgatcaatttcttacaactaaataacttaa 472  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47726657 aacttaaat-accaatttattacaataaaataacttaa 47726693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 237 - 472
Target Start/End: Original strand, 47747763 - 47747999
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    |||||||| ||  ||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |||||| |||||| || |    
T  47747763 taagtattgtttgtaacacttaggtgctttaagttatttaattgtaacttttagatcccgaataacttgcatttttaagatatgaaattcctcaaattgt 47747862  T
Q  336 tacagttaaatagcttagaggacctaattggtac-gnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaa 434  Q
    ||  || ||||| |  | |||||||  |||||||         ||||||||||| ||||||  |  ||||||||||||| |||||||||| || | ||||    
T  47747863 taaggtaaaataacacaaaggaccttgttggtacaagaaaaacttaaaggaccatcttgttcgagctaattaacttaaatgacctaagtgatatgaaaaa 47747962  T
Q  435 aacttaaatgatcaatttcttacaactaaataacttaa 472  Q
    ||||||||| | |||||| ||||||  |||||||||||    
T  47747963 aacttaaat-accaatttattacaataaaataacttaa 47747999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 381 - 474
Target Start/End: Complemental strand, 16554396 - 16554303
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    |||||||||||||||| |||| ||||||||||| ||| ||||||||||  |||||||||||| || |||||| |||||| ||||||||||||||    
T  16554396 aaggaccaacttgttacaattgattaacttaaatgacttaagtggtaccaaaaaaacttaaaggaccaatttattacaattaaataacttaaaa 16554303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 238 - 368
Target Start/End: Complemental strand, 29955000 - 29954870
Alignment:
Q  238 aagtatttttcataacacttaggtcgtttaagttatttaattgtaactttaggtccc-gaataacttgcagttttaagatctgaaatccctcaatttctt 336  Q
    ||||||||| | || |||||||||| ||||||||||||||||||||||||  ||||| ||||||||| || ||||||||| |||||| |  ||| || ||    
T  29955000 aagtattttccgtaccacttaggtc-tttaagttatttaattgtaacttttagtcccagaataacttacatttttaagatatgaaattctccaaattatt 29954902  T
Q  337 acagttaaatagcttagaggacctaattggta 368  Q
    || |||||||| |||| |||||||||||||||    
T  29954901 acggttaaataacttaaaggacctaattggta 29954870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 384 - 473
Target Start/End: Complemental strand, 18470279 - 18470189
Alignment:
Q  384 gaccaacttgttataattaattaacttaaaggacctaagtggtacg-taaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||| | |||| |||||||||||||||||| ||||||  ||||||| ||||||||||| || |||||| |||||||||||||    
T  18470279 gaccaacttgttacagttaaataacttaaaggacctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 378 - 473
Target Start/End: Original strand, 802251 - 802346
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||||||||||||||| |||||||||| | ||||||  ||||||||||| |||||  ||||| || |||||| |||||  |||||||||||||    
T  802251 ttaaaggaccaacttgttacaattaattaattcaaaggatataagtggtacgaaaaaagtttaaaggaccaatttattacatttaaataacttaaa 802346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 385 - 492
Target Start/End: Original strand, 12656368 - 12656474
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggt 484  Q
    |||||||| ||| ||||||||||||||||||   ||||||||||| |||||| |||||  |||||| | |||||| ||||||||||||| |||||  |||    
T  12656368 accaacttattacaattaattaacttaaagggtttaagtggtacg-aaaaaatttaaaaaatcaatatgttacaattaaataacttaaaggactttcggt 12656466  T
Q  485 gtaattta 492  Q
    ||||||||    
T  12656467 gtaattta 12656474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 387 - 473
Target Start/End: Complemental strand, 16026194 - 16026108
Alignment:
Q  387 caacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||| ||| | |||| |||||||||||||||||| |||||| ||||||  |||||||| || || |||||| |||||||||||||    
T  16026194 caacttattacagttaaataacttaaaggacctaagaggtacgaaaaaaatgtaaatgattaacttattacaattaaataacttaaa 16026108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 298 - 494
Target Start/End: Original strand, 11016877 - 11017075
Alignment:
Q  298 taacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn--ttaaaggaccaacttgtt 395  Q
    |||||| || ||||||||| | ||||| ||||| || |||| ||||||||| ||| ||||||||||||| |||         |||||| | |||||||||    
T  11016877 taacttacatttttaagattttaaatctctcaaattgttacggttaaatagtttaaaggacctaattggaacgaaaaacaacttaaag-atcaacttgtt 11016975  T
Q  396 ataattaattaacttaaaggacctaagtggtacgtaaaaaacttaa-atgatcaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 494  Q
    | |||||| |||||||||  ||||||||| || | ||||||  ||| | ||| ||||| ||| || ||||||||||||| ||| ||| ||||||||||||    
T  11016976 acaattaaataacttaaaacacctaagtgatatgcaaaaaaaataagaagattaatttattataattaaataacttaaaggacatatagtgtaatttaac 11017075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 26706207 - 26706274
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 303  Q
    |||||| ||||| ||||||||||||  ||||||||||||||||||||| |||||| | ||||||||||    
T  26706207 taagtagttttcgtaacacttaggttctttaagttatttaattgtaacttttaggcctcgaataactt 26706274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 378 - 473
Target Start/End: Complemental strand, 46530258 - 46530163
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    ||||||| | ||||||||| |||||||||||||||| |||||||||||| || |||| | |||||  | || ||| | |||| |||||||||||||    
T  46530258 ttaaagggcaaacttgttacaattaattaacttaaaagacctaagtggtgcgaaaaagaattaaagaaccagtttgtgacaattaaataacttaaa 46530163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Complemental strand, 48130268 - 48130213
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||| |||||||||||||||| || |||||||||||  ||||||||||||    
T  48130268 accaacttgttacaattaattaacttaaatgatctaagtggtac--aaaaaacttaaa 48130213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 479
Target Start/End: Original strand, 48130428 - 48130516
Alignment:
Q  390 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagactt 479  Q
    ||||||| || ||||||||||||| ||||||| |||||   | ||||||||||| |||||||| |||||| ||||||| ||||| |||||    
T  48130428 cttgttacaagtaattaacttaaaagacctaaatggtaaa-agaaaacttaaataatcaatttattacaattaaataatttaaaggactt 48130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 492
Target Start/End: Original strand, 363806 - 363906
Alignment:
Q  393 gttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaag-acttatggtgtaattt 491  Q
    |||| ||||||  |||||||| ||| ||||   |||| |||| ||||||||||  |||||||||||| ||||||||||||||| || | |||||||||||    
T  363806 gttacaattaaacaacttaaatgacttaagcattacgaaaaatacttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaattt 363905  T
Q  492 a 492  Q
    |    
T  363906 a 363906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 378 - 457
Target Start/End: Original strand, 26706353 - 26706432
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaactt-aaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttac 457  Q
    ||||||||| ||||||| ||||||||||||||| ||||||| ||| || |||| ||||||||||||  |||||||| ||||    
T  26706353 ttaaaggacaaacttgtaataattaattaacttaaaaggacttaaatgatacg-aaaaaacttaaagaatcaatttattac 26706432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 492
Target Start/End: Original strand, 46530411 - 46530517
Alignment:
Q  390 cttgttataattaattaacttaaaggacctaagtggtacgtaaaaaa---cttaaat-gatcaatttcttacaactaaataacttaaaagacttatggtg 485  Q
    ||||||| |||||||||||||||| ||| | ||||||||| ||||||   ||||||  || |||||| |||||| ||||||||| ||| ||| | |||||    
T  46530411 cttgttacaattaattaacttaaatgacgtgagtggtacgaaaaaaaaaacttaaaaagagcaatttgttacaaataaataactaaaatgacatctggtg 46530510  T
Q  486 taattta 492  Q
    |||||||    
T  46530511 taattta 46530517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 237 - 283
Target Start/End: Complemental strand, 18470430 - 18470384
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaa 283  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||    
T  18470430 taagtatttttcatacaacttagatcctttaagttatttaattgtaa 18470384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 442
Target Start/End: Original strand, 16026346 - 16026406
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||||||| |||||| ||||||||||  | ||||| ||||| ||||||||||||    
T  16026346 aaggaccaacttgttacaattaagtaacttaaagagcgtaagttgtacg-aaaaaacttaaa 16026406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 385 - 442
Target Start/End: Original strand, 18470439 - 18470495
Alignment:
Q  385 accaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  18470439 accaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 18470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 370
Target Start/End: Original strand, 47600499 - 47600648
Alignment:
Q  222 aacaagttagttatgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataacttgcagttttaagatctga 320  Q
    ||||| ||||| || |||||||||||| |||  |||||||| ||  |||| |||||||||||| |||||| ||| ||| ||||  | |||||| ||||||    
T  47600499 aacaaattagtcatttaagtatttttcgtaatgcttaggtctttcgagttgtttaattgtaacttttaggacccaaattacttcaatttttaacatctga 47600598  T
Q  321 aatccctcaatttcttacagttaaatagcttagaggacctaattggtacg 370  Q
    ||| || |||  | ||||  ||||||| |||| | |||| ||||||||||    
T  47600599 aataccacaaacttttacgattaaataacttaaatgaccaaattggtacg 47600648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 494
Target Start/End: Original strand, 23808083 - 23808199
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagac 477  Q
    ||||| ||||||||| ||| |||||| ||||||||  ||||||| || || |  ||||||| ||| ||  ||||| |||||| |||| |||||||||||     
T  23808083 ttaaatgaccaacttattacaattaaataacttaatagacctaactgatatgagaaaaactaaaaagaataatttattacaattaaacaacttaaaagat 23808182  T
Q  478 ttatggtgtaatttaac 494  Q
     | || |||||||||||    
T  23808183 ctttgatgtaatttaac 23808199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 4e-21; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 234 - 469
Target Start/End: Complemental strand, 30534666 - 30534432
Alignment:
Q  234 atgtaagtatttttcataacacttaggtcgtttaagttatttaattgtaactt-taggtcccgaataacttgcagttttaagatctgaaatccctcaatt 332  Q
    ||||||||||||||| ||| ||||||||| ||||| ||||||||||||||||| |||| ||| |||||||| || ||||||||||| |||   ||||| |    
T  30534666 atgtaagtatttttcgtaagacttaggtcttttaaattatttaattgtaacttgtaggccccaaataacttacatttttaagatctaaaacatctcaaat 30534567  T
Q  333 tcttacagttaaatagcttagaggacctaattggtacgnnnnnnnttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtac-gta 431  Q
    | ||||||||||||| |||| | || ||| ||||||||        | || || |||||| ||| ||||||||||| |||| |||||||| |||||   |    
T  30534566 tgttacagttaaataactta-aagagctagttggtacggaaaaaacttaaagagcaactttttacaattaattaacataaa-gacctaagcggtacaaaa 30534469  T
Q  432 aaaaacttaaatgatcaatttcttacaactaaataact 469  Q
    ||||||||||| || |||||| |||||| |||||||||    
T  30534468 aaaaacttaaaagaccaattt-ttacaattaaataact 30534432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 237 - 473
Target Start/End: Original strand, 51265744 - 51265984
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaacttt-aggtcccgaataacttgcagttttaagatctgaaatccctcaatttct 335  Q
    |||||||||||||||  |||||| || |||||||||||||||||||| ||| | | |  ||| |||||  | ||||||||||||||||| ||||| || |    
T  51265744 taagtatttttcatacaacttagatcctttaagttatttaattgtaaatttcaagccttgaaaaacttaaatttttaagatctgaaatctctcaaattgt 51265843  T
Q  336 tacagttaaatagcttagaggacctaattggtacgnnnnnnn---ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacg-ta 431  Q
    ||| |||||||| |||| | ||| ||| || ||||          ||||  ||||||||||||||| |||| |||||||||||| ||||| ||||||  |    
T  51265844 tacggttaaataacttaaaagac-taagtgatacgggaaaaaaacttaacagaccaacttgttatagttaaataacttaaaggatctaagaggtacgaaa 51265942  T
Q  432 aaaaacttaaatgatcaatttcttacaactaaataacttaaa 473  Q
    |||||| ||||||||||| || |||||| |||||||||||||    
T  51265943 aaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 285 - 442
Target Start/End: Complemental strand, 44291182 - 44291025
Alignment:
Q  285 tttaggtcccgaataacttgcagttttaagatctgaaatccctcaatttcttacagttaaatagcttagaggacctaattggtacgnnnnnnn-ttaaag 383  Q
    ||||||||||||||||||| || ||||||||||| |||||||  || || |||| |||||||| |||| || ||||  ||||||||        |||||     
T  44291182 tttaggtcccgaataacttacatttttaagatctaaaatccccaaaattgttacggttaaataacttaaag-accttgttggtacggaaaaaacttaaaa 44291084  T
Q  384 gaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    | ||||||||||| || ||||||||||||| ||| ||||||||||| ||||||||||||    
T  44291083 ggccaacttgttacaactaattaacttaaatgacttaagtggtacgaaaaaaacttaaa 44291025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 474
Target Start/End: Original strand, 44291413 - 44291509
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaa 474  Q
    ||||||||| ||||||||| |||||| ||||||||||||| |||||| |||  |||||| ||| | || |||||| |||||| ||||||||||||||    
T  44291413 ttaaaggactaacttgttacaattaaataacttaaaggacataagtgatactaaaaaaatttagaggaccaatttgttacaattaaataacttaaaa 44291509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 388 - 492
Target Start/End: Original strand, 48200367 - 48200471
Alignment:
Q  388 aacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgta 487  Q
    ||||| ||| ||| |||||| ||||| ||| |||| |||||| |||||| ||||||||||||||  |||||| ||||||| |||||||| || | |||||    
T  48200367 aacttattacaatcaattaatttaaaagacttaagcggtacgaaaaaaaattaaatgatcaattctttacaattaaataagttaaaagatttctagtgta 48200466  T
Q  488 attta 492  Q
    |||||    
T  48200467 attta 48200471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 398 - 492
Target Start/End: Original strand, 33291582 - 33291676
Alignment:
Q  398 aattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||||||||||||||| ||| |||||||||   |||||  |||||  |  ||||| |||||| ||||||||||||| |||||||| |||||||||    
T  33291582 aattaattaacttaaatgacataagtggtataaaaaaagtttaaagtactaatttgttacaattaaataacttaaaggacttatgttgtaattta 33291676  T

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Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 381 - 442
Target Start/End: Complemental strand, 51265739 - 51265679
Alignment:
Q  381 aaggaccaacttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaa 442  Q
    |||||||||||||||| |||||| ||||||||||  | ||||||||||| ||||||||||||    
T  51265739 aaggaccaacttgttacaattaagtaacttaaagagcgtaagtggtacg-aaaaaacttaaa 51265679  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  161 gtatcacttacgtcatttaagttatttaattataacaagttagt 204  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 303
Target Start/End: Original strand, 50898882 - 50898948
Alignment:
Q  237 taagtatttttcataacacttaggtcgtttaagttatttaattgtaac-tttaggtcccgaataactt 303  Q
    |||||||||||| ||||||||||||  |||||||| |||||||||||| |||| ||| ||||||||||    
T  50898882 taagtatttttcgtaacacttaggt-atttaagttgtttaattgtaacttttacgtctcgaataactt 50898948  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 391 - 492
Target Start/End: Original strand, 1662257 - 1662357
Alignment:
Q  391 ttgttataattaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaatt 490  Q
    |||||| ||||||||||| ||| ||| ||||||||||   |||||||||||| ||||||||| || ||| ||||||  ||||| ||| | || |||||||    
T  1662257 ttgttacaattaattaacataatggatctaagtggtata-aaaaaacttaaaagatcaatttattgcaattaaatactttaaaggacctctgatgtaatt 1662355  T
Q  491 ta 492  Q
    ||    
T  1662356 ta 1662357  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 414
Target Start/End: Original strand, 9343215 - 9343251
Alignment:
Q  378 ttaaaggaccaacttgttataattaattaacttaaag 414  Q
    ||||||||||||||| |||||||||| ||||||||||    
T  9343215 ttaaaggaccaacttattataattaaataacttaaag 9343251  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 400 - 492
Target Start/End: Original strand, 14747077 - 14747167
Alignment:
Q  400 ttaattaacttaaaggacctaagtggtacgtaaaaaacttaaatgatcaatttcttacaactaaataacttaaaagacttatggtgtaattta 492  Q
    |||| |||| |||| |||||||||||||   ||||||||||||  ||||| || |||||| ||||||| ||||||||||| | ||||||||||    
T  14747077 ttaaataacataaatgacctaagtggtaaa-aaaaaacttaaaa-atcaaattgttacaattaaataaattaaaagactttttgtgtaattta 14747167  T

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