View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_6 (Length: 413)
Name: NF3882_low_6
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 49 - 372
Target Start/End: Original strand, 4520377 - 4520700
Alignment:
| Q |
49 |
ttttcaagacatcaacacagataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
148 |
Q |
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| T |
4520377 |
ttttcaagacatcaacacaaataaaaagatacttacaccattatgcataaactcagtctacacaggtgtagaaaaattgaaaacagagaaagtaacgaca |
4520476 |
T |
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| Q |
149 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatnnnnnnn |
248 |
Q |
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| T |
4520477 |
gtaaaacagagaaagttgtgcacaaatacagtttagtatgaacaccacctccccattcgatatgagttgttggacagatggggatttctgcatccccccg |
4520576 |
T |
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| Q |
249 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaattgaagaaattaaa |
348 |
Q |
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| T |
4520577 |
gatgccttctacgtcttgcagatgggaatattctcttaaccttcaataaaagggaacaatgactagcaaggaaggcacgaagaaaactgaagaaattaaa |
4520676 |
T |
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| Q |
349 |
agtctccttctccctttgctactc |
372 |
Q |
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| T |
4520677 |
agtctccttcttcctttggtactc |
4520700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 4520309 - 4520345
Alignment:
| Q |
14 |
atcacaaacaaagtaaacacttcctataaatttgttt |
50 |
Q |
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| T |
4520309 |
atcacaaacaaagtaaacacttcctataaatttgttt |
4520345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 8152599 - 8152635
Alignment:
| Q |
49 |
ttttcaagacatcaacacagataaaaagatacttaca |
85 |
Q |
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| T |
8152599 |
ttttcaagacatcaacacaaataaaaagatacttaca |
8152635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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