View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3882_low_9 (Length: 278)
Name: NF3882_low_9
Description: NF3882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3882_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 3840576 - 3840820
Alignment:
| Q |
1 |
gtagcatttcattaatcaaaatatatgtttaatacaatctggtatttctagcaatatttggaaactagaagacaatatgaccgccttagctaaagaaagt |
100 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3840576 |
gtagcatttcattaatcaaaatat--gtttaataaaatctggtatttctagcaatatttggaaactagaagacaatatgaccgtcttagctaaagaaagt |
3840673 |
T |
|
| Q |
101 |
ccaatatcaccgccttagctaaagtaaagagaaacaacataaatttttatgttttatatattaccttgattatccctgttgatggaagatctgatccata |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840674 |
ccaatatcaccgccttagctaaagtaaagagaaacaacataaattttcatgttt----tattaccttgattatccctgttgatggaagatctgatccata |
3840769 |
T |
|
| Q |
201 |
aatttcctcgtgacccttaaaaaatgtattagtaaatgaaatggttatgta |
251 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
3840770 |
aatttccttgtgacccttaaaaaatgtattagtaaatgaaatggttatgta |
3840820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 274
Target Start/End: Original strand, 3831311 - 3831356
Alignment:
| Q |
229 |
ttagtaaatgaaatggttatgtaaatagtttaagaataaattagca |
274 |
Q |
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||||||||||||||||||| | || ||||||||||||||||||||| |
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| T |
3831311 |
ttagtaaatgaaatggttaagcaactagtttaagaataaattagca |
3831356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 4084663 - 4084601
Alignment:
| Q |
4 |
gcatttcattaatcaaaatatatgtttaatacaatctggtatttctagcaatatttggaaactag |
68 |
Q |
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|
| T |
4084663 |
gcatttcattcatcaaaatgt--gttcaatacaatatggtatttctaccaatatttggaaactag |
4084601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 3837557 - 3837620
Alignment:
| Q |
215 |
ccttaaaaaatgtattagtaaatgaaatggttatgtaaatagtttaagaataaattagcaggtc |
278 |
Q |
| |
|
|||||||||| || ||| ||||| ||||||||| |||| | |||||||||||||||| |||||| |
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|
| T |
3837557 |
ccttaaaaaaggtgttaataaatcaaatggttaagtaactggtttaagaataaattaacaggtc |
3837620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 95
Target Start/End: Complemental strand, 5213248 - 5213158
Alignment:
| Q |
3 |
agcatttcattaatcaaaatatatgtttaatacaatctggtatttctagcaatatttggaaactagaagacaatatgaccgccttagctaaag |
95 |
Q |
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|
||||||||||||||||| |||||||||||||||||| |||||| | | |||| |||||||||| |||||| | ||||||||||||||| |
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| T |
5213248 |
agcatttcattaatcaa--tatatgtttaatacaatcaggtattacaaataataactggaaactagctgacaatgtagccgccttagctaaag |
5213158 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Original strand, 3672020 - 3672063
Alignment:
| Q |
5 |
catttcattaatcaaaatatatgtttaatacaatctggtatttcta |
50 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
3672020 |
catttcattaatcaaaatat--gtttaatacaatctgatatttcta |
3672063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 20685586 - 20685544
Alignment:
| Q |
26 |
tgtttaatacaatctggtatttctagcaatatttggaaactag |
68 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||||||||| |
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|
| T |
20685586 |
tgttcaatacaatctggtatttctatcaaaatttggaaactag |
20685544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 15521431 - 15521381
Alignment:
| Q |
5 |
catttcattaatcaaaatatatgtttaatacaatctggtatttctagcaatat |
57 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||| |||||||| |||||| |
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| T |
15521431 |
catttcattaatcaaaatat--gttcaatacaatctgatatttctaccaatat |
15521381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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