View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_high_11 (Length: 303)
Name: NF3883_high_11
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 8233706 - 8233421
Alignment:
| Q |
1 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8233706 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
8233607 |
T |
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| Q |
101 |
caacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattcagacccaaat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8233606 |
caacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgagggtttttgaaacacactttggtattgatgtggtttcagacccaaat |
8233507 |
T |
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| Q |
201 |
gagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaaga |
286 |
Q |
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| T |
8233506 |
gagcttgctcgtgtttatgaatctttgttcacacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaaga |
8233421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 8237053 - 8236771
Alignment:
| Q |
1 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8237053 |
gtgtggaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
8236954 |
T |
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| Q |
101 |
caacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattcagacccaaat |
200 |
Q |
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| T |
8236953 |
caacgacggtcttctctcctatgaagagatgttgaaggagctccggagcttgaggatttttgaaacacactttggtattgatgtggattcagacccaaat |
8236854 |
T |
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| Q |
201 |
gagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaa |
283 |
Q |
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| T |
8236853 |
gagcttgctcgtgtttatgaatctttgttcatacaattcgatcacaacttgaatggcacaattgatttggaagaattcaagaa |
8236771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 8223945 - 8223660
Alignment:
| Q |
1 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
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| T |
8223945 |
gtgtagaaattttggatggtgccacaattgtccatttccttgaagatgaagaagcatttaatagctcggtaggaaatcggtttgctcggctcgacacaaa |
8223846 |
T |
|
| Q |
101 |
caacgacggtcttctctcctatgaagagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattcagacccaaat |
200 |
Q |
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| T |
8223845 |
taaggatggtctgctctcctatgatgagatgttgaaggagctcaggagcttgagggtttttgaaacacactttggtattgatgtggattcagacccaaat |
8223746 |
T |
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| Q |
201 |
gagcttgctcgtgtttatgaatctttgttcatacagttcgatcacaacttgaatggcacaattgatttggaagaattcaagaaaga |
286 |
Q |
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|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
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| T |
8223745 |
gagcttgctcgtgtttatgagtcgttgttcatacagttcgatcacaacttgaatggcacggttgatctggaagaattcaagaaaga |
8223660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 8240020 - 8239872
Alignment:
| Q |
1 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcatttaatagctcggtaggaaatcggttcgctcgcctcgacacaaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| ||||| ||||||||||| |
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| T |
8240020 |
gtgtagaaattttggatggtgccacaattgtccacttccttgaagatgaagaagcgtttaatagctcagtaggaaatcagtttgctcggctcgacacaaa |
8239921 |
T |
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| Q |
101 |
caacgacggtcttctctcctatgaagagatgttgaaggagctcaggagc |
149 |
Q |
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|| || ||||| ||||| ||||| |||||||||||||||||||||||| |
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| T |
8239920 |
taaggatggtctgctctcttatgatgagatgttgaaggagctcaggagc |
8239872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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