View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_high_16 (Length: 251)
Name: NF3883_high_16
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 238
Target Start/End: Complemental strand, 1439683 - 1439467
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1439683 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
1439584 |
T |
|
| Q |
121 |
agagaaaccacattggttaaaagtgttgtttctcacnnnnnnnnnatcaaggttgcgttgctgattattgctagttctttatgctatcattatatcaagt |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1439583 |
agagaaaccacattggttaaaagtgttgtttctcac-ttttttttatcaaggttgcgttgctgattattgctagttctttatgctatcattatatcaagt |
1439485 |
T |
|
| Q |
221 |
atagttgtacctttgctt |
238 |
Q |
| |
|
|||||||||||||||||| |
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| T |
1439484 |
atagttgtacctttgctt |
1439467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 28090994 - 28090882
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
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|||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||||| || || || |||||||||| |||||||||||||||| |
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| T |
28090994 |
tttagcacgaagtgaaaatgcctccacattggttaagcatcttactgttctgtcgctagtcaaaccctggccgtgaagctttatttttttaccttctgca |
28090895 |
T |
|
| Q |
121 |
agagaaaccacat |
133 |
Q |
| |
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||||||||||||| |
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| T |
28090894 |
agagaaaccacat |
28090882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 28034968 - 28034860
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
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||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||| || || |||||| ||| ||||||||||||||| ||| || |
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| T |
28034968 |
tttagcgtcgagtgaaaatgcctccacattggttaagcattttactgttctgtcactagttaagccatgtcctcgaatctttacttttttaccgtctaca |
28034869 |
T |
|
| Q |
121 |
agagaaacc |
129 |
Q |
| |
|
||||||||| |
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| T |
28034868 |
agagaaacc |
28034860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 28047174 - 28047066
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||| || || |||||||||| |||||| ||||||| |||| || |
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| T |
28047174 |
tttagcgtcgagtgaaaatgcctcaacattggttaagcattttaccgttctgtcactagttaagccctgtccttgaatctttacatttttactttctaca |
28047075 |
T |
|
| Q |
121 |
agagaaacc |
129 |
Q |
| |
|
||||||||| |
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|
| T |
28047074 |
agagaaacc |
28047066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 129
Target Start/End: Complemental strand, 27916601 - 27916502
Alignment:
| Q |
30 |
gagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaagagaaacc |
129 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||| | || | |||||||||| ||||||||||||||||||| ||||||||||| |
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| T |
27916601 |
gagtgaaaatgcctccacattggttaagcaatttactgttctgtcactaattaagtcctgtccttgaatctttacttttttaccttctacaagagaaacc |
27916502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 28001615 - 28001508
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||| |||||| |||| |||||| || || |||||||||||||||||||||||||||| | |
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| T |
28001615 |
tttaacgcggagtgaaaatgcctccacattggttaagcattttactgatctggtactagttaagccccatccttgaagctttacttttttaccttctacg |
28001516 |
T |
|
| Q |
121 |
agagaaac |
128 |
Q |
| |
|
|||||||| |
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|
| T |
28001515 |
agagaaac |
28001508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 28017214 - 28017118
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttct |
117 |
Q |
| |
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||||||| |||| |||||||||| |||| |||||||||| ||||||||||||||||||| || || |||||||||| |||||||| |||||||||| |
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| T |
28017214 |
tttagcgtcgagtaaaaatgcctccacatcggttaagcattttactgttctgtcactagttaagccatgtccttgaatctttacttctttaccttct |
28017118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 129
Target Start/End: Complemental strand, 28074349 - 28074241
Alignment:
| Q |
21 |
tttagcgcggagtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgca |
120 |
Q |
| |
|
||||||| ||||||||||||||| | ||||||||||||||||||||||||||||||| | || | ||| |||||| |||||||| ||||||||| || |
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| T |
28074349 |
tttagcgtcgagtgaaaatgcctccaaattggttaagcatcttactgttctgtcactaattaagtcatgttcttgaatctttacttgcttaccttctaca |
28074250 |
T |
|
| Q |
121 |
agagaaacc |
129 |
Q |
| |
|
||||||||| |
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|
| T |
28074249 |
agagaaacc |
28074241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 121
Target Start/End: Complemental strand, 28533757 - 28533667
Alignment:
| Q |
31 |
agtgaaaatgcctcaacattggttaagcatcttactgttctgtcactagtcaatccttgtccttgaagctttacttttttaccttctgcaa |
121 |
Q |
| |
|
|||||||||||||| ||||| |||||||| ||||||| |||| ||| | |||| |||||| ||||| ||||||||||||| ||||||| |
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| T |
28533757 |
agtgaaaatgcctccacatttgttaagcactttactgtcctgttgctaattaatctctgtcctggaagccttacttttttaccatctgcaa |
28533667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 238
Target Start/End: Complemental strand, 28090824 - 28090791
Alignment:
| Q |
205 |
tatcattatatcaagtatagttgtacctttgctt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
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|
| T |
28090824 |
tatcattatatcaagtatagttgtacctttgctt |
28090791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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