View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3883_high_18 (Length: 238)

Name: NF3883_high_18
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3883_high_18
NF3883_high_18
[»] chr1 (3 HSPs)
chr1 (18-226)||(32765750-32765955)
chr1 (26-226)||(32755363-32755563)
chr1 (42-199)||(16774822-16774979)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 32765955 - 32765750
Alignment:
Q  18 tttatttgttattggttgctgatgcagggagaaaccagacaggcctttccgttgccttgattgtcaatataggagagaactagttagggtatatttgaca 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  32765955 tttatttgttattggttgctgatgcagggagaaaccagacaggcctttccgttgccttgattgtcaatataggagagaactagttaaggtatatttgaca 32765856  T
Q  118 aatgtagaacaaatttgtcggcgttttgtggaggaaagacgaagcaagcttgggaagttgatagaggataaagctaggtggttgaggtactttatgctct 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||    
T  32765855 aatgtagaacaaatttgtcggcgttttgtggaggaaagacgaagcaagcttgggaagttgatagaggataaagctaggtggttgaggta---tatgctct 32765759  T
Q  218 cctttgata 226  Q
    |||||||||    
T  32765758 cctttgata 32765750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 26 - 226
Target Start/End: Complemental strand, 32755563 - 32755363
Alignment:
Q  26 ttattggttgctgatgcagggagaaaccagacaggcctttccgttgccttgattgtcaatataggagagaactagttagggtatatttgacaaatgtaga 125  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  32755563 ttattggttgctgctgcagggagaaatcagacaggcctttccgttgccttgattgtcattataggagagaacttgttagggtatatttgacaaatgtaga 32755464  T
Q  126 acaaatttgtcggcgttttgtggaggaaagacgaagcaagcttgggaagttgatagaggataaagctaggtggttgaggtactttatgctctcctttgat 225  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  32755463 acaaatttgtcggcgttttgtggaggaaagacgaagcaagcttgggaagttgatagaggataaagctaggtggtcgaggtactttatgctctcctttgat 32755364  T
Q  226 a 226  Q
    |    
T  32755363 a 32755363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 42 - 199
Target Start/End: Original strand, 16774822 - 16774979
Alignment:
Q  42 cagggagaaaccagacaggcctttccgttgccttgattgtcaatataggagagaactagttagggtatatttgacaaatgtagaacaaatttgtcggcgt 141  Q
    |||||| ||| | ||||||||||| |||||||||||||| || ||||||||||| || |||||||| |||||||||||||||||||||||||||||||||    
T  16774822 cagggaaaaagctgacaggccttttcgttgccttgattgccagtataggagagagcttgttagggtctatttgacaaatgtagaacaaatttgtcggcgt 16774921  T
Q  142 tttgtggaggaaagacgaagcaagcttgggaagttgatagaggataaagctaggtggt 199  Q
    ||||||||||| ||| ||||||||||||||||| |||||||||||||||||| |||||    
T  16774922 tttgtggaggagagaagaagcaagcttgggaagctgatagaggataaagctaagtggt 16774979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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