View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3883_high_2 (Length: 790)

Name: NF3883_high_2
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3883_high_2
NF3883_high_2
[»] chr2 (5 HSPs)
chr2 (70-187)||(21627544-21627660)
chr2 (70-186)||(32791393-32791508)
chr2 (70-170)||(236144-236243)
chr2 (378-443)||(32791884-32791949)
chr2 (367-454)||(21628118-21628204)
[»] chr6 (9 HSPs)
chr6 (44-196)||(17006901-17007039)
chr6 (81-176)||(16579892-16579986)
chr6 (81-176)||(16615394-16615488)
chr6 (196-313)||(17006719-17006842)
chr6 (80-178)||(16571320-16571417)
chr6 (391-443)||(16571794-16571846)
chr6 (322-417)||(16571683-16571771)
chr6 (322-477)||(16873687-16873835)
chr6 (142-187)||(16873265-16873310)
[»] scaffold0256 (3 HSPs)
scaffold0256 (77-187)||(12294-12403)
scaffold0256 (70-187)||(14639-14762)
scaffold0256 (362-454)||(11906-11998)
[»] chr1 (2 HSPs)
chr1 (70-170)||(7389562-7389661)
chr1 (362-417)||(7390224-7390279)
[»] chr7 (2 HSPs)
chr7 (71-132)||(48300607-48300668)
chr7 (362-486)||(48299862-48299986)


Alignment Details
Target: chr2 (Bit Score: 82; Significance: 3e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 70 - 187
Target Start/End: Original strand, 21627544 - 21627660
Alignment:
Q  70 tggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctga 169  Q
    |||||| |||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| || || ||||||||||||||||||||||||||||    
T  21627544 tggagatttcaaaggttcttctaaggttgccttgattagggttgaactcatttactacaaacctcaag-aggtttacgatgcaatgagaacattggctga 21627642  T
Q  170 gccggagaacaggaggac 187  Q
    |||||||||||| |||||    
T  21627643 gccggagaacagtaggac 21627660  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 70 - 186
Target Start/End: Original strand, 32791393 - 32791508
Alignment:
Q  70 tggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctga 169  Q
    |||||| ||||||| |||||||||||||| |||||||||||||||| |||||| |||||||| || || || |||||||| ||||||||||||| |||||    
T  32791393 tggagatttcaaagtttcttctaaggttgccttgatgagggttgaactcatttcctacaaacttcaag-aggtttacgatacaatgagaacattagctga 32791491  T
Q  170 gccggagaacaggagga 186  Q
    || ||||||||| ||||    
T  32791492 gctggagaacagcagga 32791508  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 70 - 170
Target Start/End: Complemental strand, 236243 - 236144
Alignment:
Q  70 tggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctga 169  Q
    |||||| ||||||| |||||||||||| | ||||| |||||||||| ||||||||||||| || | |  || ||||||| |||| ||||| |||||||||    
T  236243 tggagatttcaaagcttcttctaaggtggccttgaagagggttgaactcatttactacaagccac-atgaggtttacgaagcaacgagaaaattggctga 236145  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 378 - 443
Target Start/End: Original strand, 32791884 - 32791949
Alignment:
Q  378 gtcactgctttcaagaaattcctgtttgatttttcatagacatgatttaaaatcaaggttggtctg 443  Q
    ||||||||||| ||||||||  |||| ||||||||||||| || |||||||||||| |||| ||||    
T  32791884 gtcactgctttaaagaaatttatgttagatttttcatagaaattatttaaaatcaatgttgatctg 32791949  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 454
Target Start/End: Original strand, 21628118 - 21628204
Alignment:
Q  367 atagattcaatgtcactgctttcaagaaattcctgtttgatttttcatagacatgatttaaaatcaaggttggtctggattacagttt 454  Q
    |||||| | |||||||| |||| ||||||||  ||||||||| | |||||| ||||||||||||||| |||| |||| ||| ||||||    
T  21628118 atagatccgatgtcactactttaaagaaatttatgtttgattct-catagaaatgatttaaaatcaatgttgatctgaattgcagttt 21628204  T

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Target: chr6 (Bit Score: 60; Significance: 4e-25; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 44 - 196
Target Start/End: Complemental strand, 17007039 - 17006901
Alignment:
Q  44 aattttgttgtgttagattgctaaggtggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttt 143  Q
    |||||||||||||||||||||||||||| ||||||||||        ||||||      |||||||||||||||||||| ||||||||| | ||| ||||    
T  17007039 aattttgttgtgttagattgctaaggtgtagacttcaaat-------taaggt------gatgagggttgaattcatttcctacaaaccccaagaggttt 17006953  T
Q  144 tacgatgcaatgagaacattggctgagccggagaacaggaggactgtaatggc 196  Q
    ||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||    
T  17006952 tacgacgcaatgagaaca-tggctgagccggagaacagcaggaccgtaatggc 17006901  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 176
Target Start/End: Original strand, 16579892 - 16579986
Alignment:
Q  81 aaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctgagccggag 176  Q
    |||||||||  ||||||| |||||||||||||||| |||||||||||||||||| || || |||| |||||||||| |||||||| ||||||||||    
T  16579892 aaggttctttaaaggttgccttgatgagggttgaactcatttactacaaacctcaag-aggtttatgatgcaatgacaacattggttgagccggag 16579986  T

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Target: chr6; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 81 - 176
Target Start/End: Complemental strand, 16615488 - 16615394
Alignment:
Q  81 aaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctgagccggag 176  Q
    |||||||||  ||||||| |||||||||||||||| |||||||||||||||||| || || |||| |||||||||| |||||||| ||||||||||    
T  16615488 aaggttctttaaaggttgccttgatgagggttgaactcatttactacaaacctcaag-aggtttatgatgcaatgacaacattggttgagccggag 16615394  T

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Target: chr6; HSP #4
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 196 - 313
Target Start/End: Complemental strand, 17006842 - 17006719
Alignment:
Q  196 cactacgctcttcatgaaaagcgcgctaactgagttgcacggaattgttatcaggaaaag-------gattggtaataaatccatcttttttcaaatgtg 288  Q
    |||||||||||||||||  || ||||||||||||||||| |||||| |||||| ||||||       ||  |||| ||||||||||||| ||||||||||    
T  17006842 cactacgctcttcatgacgagtgcgctaactgagttgcaaggaatt-ttatcatgaaaagattcaaggacaggtagtaaatccatctttattcaaatgtg 17006744  T
Q  289 tacttattatggtcaagtgcatgtt 313  Q
    ||||||||| |||||||||||||||    
T  17006743 tacttattacggtcaagtgcatgtt 17006719  T

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Target: chr6; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 80 - 178
Target Start/End: Original strand, 16571320 - 16571417
Alignment:
Q  80 aaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctgagccggagaa 178  Q
    |||||||||||||| |||| ||||  |||||||||| |||||||||||||||||| || || |||| |  |||||||||||||||||||| ||||||||    
T  16571320 aaaggttcttctaatgttgccttgtcgagggttgaactcatttactacaaacctcaag-aggtttaagtggcaatgagaacattggctgacccggagaa 16571417  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 391 - 443
Target Start/End: Original strand, 16571794 - 16571846
Alignment:
Q  391 agaaattcctgtttgatttttcatagacatgatttaaaatcaaggttggtctg 443  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||| ||||    
T  16571794 agaaattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctg 16571846  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 16571683 - 16571771
Alignment:
Q  322 gtgcatacaatatataatgttcagtaatttatatatttattttttatagattcaatgtcactgctttcaagaaattcctgtttgatttttcataga 417  Q
    |||| |||||||||| |||||||||||| ||||  ||||      |||||| ||||||||||| ||  ||||||||||||||||||||||||||||    
T  16571683 gtgcttacaatatatgatgttcagtaatatataatttta------atagatccaatgtcactg-ttcaaagaaattcctgtttgatttttcataga 16571771  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 322 - 477
Target Start/End: Original strand, 16873687 - 16873835
Alignment:
Q  322 gtgcatacaatatataatgttcagtaatttatatatttattttttatagattcaatgtcactgctttcaagaaattcctgtttgatttttcatagacatg 421  Q
    |||| |||||||||| |||||||||||| ||||  ||||      |||||| ||||||||||| ||  ||||| |||||||||| ||||||||||| ||     
T  16873687 gtgcttacaatatatgatgttcagtaatatataatttta------atagatccaatgtcactg-ttcaaagaagttcctgtttgctttttcatagaaata 16873779  T
Q  422 atttaaaatcaaggttggtctggattacagtttcgacaaattatatatctttacat 477  Q
    ||| |||||||| |||| |||| | | |||||| | || ||||| | |||||||||    
T  16873780 attaaaaatcaatgttgatctgaagtgcagtttaggcacattatttctctttacat 16873835  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 187
Target Start/End: Original strand, 16873265 - 16873310
Alignment:
Q  142 tttacgatgcaatgagaacattggctgagccggagaacaggaggac 187  Q
    |||| |||||| |||||||||||| ||||||||||||||| |||||    
T  16873265 tttatgatgcattgagaacattggttgagccggagaacagcaggac 16873310  T

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Target: scaffold0256 (Bit Score: 55; Significance: 3e-22; HSPs: 3)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 12403 - 12294
Alignment:
Q  77 ttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctgagccggag 176  Q
    ||||||||||||||||| |||| ||||  |||||||||| |||||||||||||| ||| || || |||| || |||||||||||||||||||| ||||||    
T  12403 ttcaaaggttcttctaatgttgccttgtcgagggttgaactcatttactacaaatctcaag-aggtttaagaggcaatgagaacattggctgacccggag 12305  T
Q  177 aacaggaggac 187  Q
    ||||| |||||    
T  12304 aacagcaggac 12294  T

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Target: scaffold0256; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 70 - 187
Target Start/End: Complemental strand, 14762 - 14639
Alignment:
Q  70 tggagacttcaaaggttcttctaaggttgtcttgatgagggttga-------attcatttactacaaacctcgagaagttttacgatgcaatgagaacat 162  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||       | |||||||||||||||||| ||| |||| |||| ||||| |||||||    
T  14762 tggagatttcaaaggttcttctaaggttgtcttgatgaaggttgatggttgaactcatttactacaaacctcaagatgttt-acgaggcaattagaacat 14664  T
Q  163 tggctgagccggagaacaggaggac 187  Q
    |||||||||||||||| || |||||    
T  14663 tggctgagccggagaatagcaggac 14639  T

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Target: scaffold0256; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 362 - 454
Target Start/End: Complemental strand, 11998 - 11906
Alignment:
Q  362 tttttatagattcaatgtcactgctttcaagaaattcctgtttgatttttcatagacatgatttaaaatcaaggttggtctggattacagttt 454  Q
    |||| ||||||  |||||||||| ||| |||| ||||||||||||||||||||||| ||||||||||||||| |||| |||| ||| ||||||    
T  11998 ttttaatagatcaaatgtcactggtttaaagatattcctgtttgatttttcatagaaatgatttaaaatcaatgttgatctgaattgcagttt 11906  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 70 - 170
Target Start/End: Original strand, 7389562 - 7389661
Alignment:
Q  70 tggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacctcgagaagttttacgatgcaatgagaacattggctga 169  Q
    |||||| ||||||| |||||||||||| | ||||| |||||||||| |||||||||||||||| | |  || ||||||| |||| ||||| |||||||||    
T  7389562 tggagatttcaaagcttcttctaaggtagccttgaagagggttgaactcatttactacaaaccac-atgaggtttacgaagcaacgagaaaattggctga 7389660  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 417
Target Start/End: Original strand, 7390224 - 7390279
Alignment:
Q  362 tttttatagattcaatgtcactgctttcaagaaattcctgtttgatttttcataga 417  Q
    |||| |||||| ||||||||||||| | |||||||  |||||||||||||||||||    
T  7390224 ttttaatagatccaatgtcactgctctaaagaaatctctgtttgatttttcataga 7390279  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 48300668 - 48300607
Alignment:
Q  71 ggagacttcaaaggttcttctaaggttgtcttgatgagggttgaattcatttactacaaacc 132  Q
    ||||| ||||||| |||||||||||| | ||||| |||||||||| ||||||||||||||||    
T  48300668 ggagatttcaaagcttcttctaaggtggccttgaagagggttgaactcatttactacaaacc 48300607  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 362 - 486
Target Start/End: Complemental strand, 48299986 - 48299862
Alignment:
Q  362 tttttatagattcaatgtcactgctttcaagaaattcctgtttgatttttcatagacatgatttaaaatcaaggttggtctggattacagtttcgacaaa 461  Q
    ||||||| ||| ||| || |||||| | ||||| | |||||||||||||||||||| || ||||||||||||   || ||| |||| |||||| |         
T  48299986 tttttatggatccaaagtgactgctctaaagaattccctgtttgatttttcatagaaataatttaaaatcaactgtgctcttgattgcagtttaggtgct 48299887  T
Q  462 ttatatatctttacattcatattga 486  Q
    |||| ||||||||||||||||||||    
T  48299886 ttatttatctttacattcatattga 48299862  T

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