View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_high_3 (Length: 755)
Name: NF3883_high_3
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 11 - 741
Target Start/End: Complemental strand, 29068583 - 29067853
Alignment:
| Q |
11 |
cataggtaggtcagaatgtcagataaatgtctttgaatcattgtaatgaccaaaatataannnnnnnatgcattactgatgttttaaagagaagctaaac |
110 |
Q |
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| T |
29068583 |
cataggtaggtcagaatgtcagataaatgtctttgaatcattgtaatgaccaaaatataatttttttatgcattactgatgttttaaagagaagctaaac |
29068484 |
T |
|
| Q |
111 |
aaaaatgtaagtggaggtgttgttagttctttttaacacatgctaggtggcttgttgcacaaagaagcaaaaaattcataaatttaccaccctctataac |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29068483 |
aaaaatgtaagtggaggtgttgttagttctttttaacacatgctaggtggcttgttgcacaaagaagcaaaaaattcataaatttaccaccctctataac |
29068384 |
T |
|
| Q |
211 |
tactaatttgtttgaagtttaaattaaaattttatgtatgcagtcatgctgctggagtttctaatcaagtttgatgggatgcttcatatatagctccatc |
310 |
Q |
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| T |
29068383 |
tactaatttgtttgaagtttaaattaaaattttatgtatgcagtcatgctgctggagtttctaatcaagtttgatgggatgcttcatatatagctccatc |
29068284 |
T |
|
| Q |
311 |
ttgattttcgtatgtagtagtattaaggaatcaccgatttcaatcttgactggactaatccagaatcaccttaaatgtggccataatcttagtttcgttg |
410 |
Q |
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| T |
29068283 |
ttgattttcgtatgtagtagtattaaggaatcaccgttttcaatcttgactggactaatccagaatcaccttaaatgtggccataatcttagtttcgttg |
29068184 |
T |
|
| Q |
411 |
atatatcaaaccataggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttgttaagagtaatggaaactgtttatcatggag |
510 |
Q |
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| T |
29068183 |
atatatcaaaccgtaggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttgttaagagtaatggaaactgtttatcatggag |
29068084 |
T |
|
| Q |
511 |
tgcgcagcatcagcatgcagtatcatattgtactgagactcgtgggaagacgaaattgtaccaagtccaaaattttgttggcgtcgttgttggaattcta |
610 |
Q |
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| T |
29068083 |
tgcgcagcatcagcatgcagtatcatattgtaccgagactcgtgggaagacgaaattgtaccaagtccaaaattttgttggcgtcgttgttggaattcta |
29067984 |
T |
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| Q |
611 |
gttatcattgtggatttgggtttatgcattgttgttaattactcgagggggatttgagagtggcacctattgcacagatcagttcaagactcagcagggt |
710 |
Q |
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| T |
29067983 |
gttatcattgtggatttgggtttatgcattgttgttaattactcgagggggatttgagagtggcacctattgcacagatcagttcaagactcagcagggt |
29067884 |
T |
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| Q |
711 |
tctcatccgagcttattgcaaaggcaagtac |
741 |
Q |
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| T |
29067883 |
tctcattcgagcttattgcaaaggcaagtac |
29067853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 395 - 470
Target Start/End: Original strand, 11854768 - 11854843
Alignment:
| Q |
395 |
aatcttagtttcgttgatatatcaaaccataggttagtcagagccttgccttcttcactaagaaatgtttcagaaa |
470 |
Q |
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| T |
11854768 |
aatcttagtttcgttgatatatcaaaccagaggttagtcagagccttgccttcttcactaagaaatgtttcagaaa |
11854843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 9e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 380 - 740
Target Start/End: Complemental strand, 34004105 - 34003727
Alignment:
| Q |
380 |
cttaaatgtggccataatcttagtttcgttgatatatcaaaccataggttagtcagagccttgccttcttcactaagaaatgtttcagaaaatagagttg |
479 |
Q |
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|||| |||||||| ||||||||||| ||||| |||||||| ||||| || | |||||||||||| ||| ||||| ||||| ||||||||||||| || |
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| T |
34004105 |
cttagatgtggccgcaatcttagttttgttgacatatcaaataataggctaattggagccttgccttattctctaagcaatgtgtcagaaaatagagctg |
34004006 |
T |
|
| Q |
480 |
ttaagagtaatggaaactgtttatcatggagtgcgcagcatcagcatgcagtatcatattgtactgagactcgtgggaagacgaaattgtaccaagtcca |
579 |
Q |
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| ||||| |||||||||||||||| | | | ||||||||||||||||||||| ||||| | || ||| || |||| ||||| | ||| ||| |
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| T |
34004005 |
tggagagtgatggaaactgtttatctggtactttgcagcatcagcatgcagtatcttattgcgcagaagctcctgataagaagaaatcgaaccgagttgg |
34003906 |
T |
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| Q |
580 |
aaattttgttggcgtcgttgttggaattctagttatcattgtggatttgggtttatgcattgttgtta------------attactcgagggggatttga |
667 |
Q |
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|| ||||||||| ||| ||||||||||||| ||||||||||| ||| ||||||||||| ||||||| ||||||| || |||||| | |
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| T |
34003905 |
aatttttgttggtgtcattgttggaattcttgttatcattgtcctttttggtttatgcatcgttgttatatgtaagaggtattactctagagggattgca |
34003806 |
T |
|
| Q |
668 |
gagtggcacctattgcacagatcagttcaag------actcagcagggttctcatccgagcttattgcaaaggcaagta |
740 |
Q |
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||| |||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||| ||||||| |
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| T |
34003805 |
gagcagcacctattgcataaatcagttcaagatagctactcagcagggttctcatgtgagcttattgcaaatgcaagta |
34003727 |
T |
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