View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_high_4 (Length: 753)
Name: NF3883_high_4
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 637; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 8 - 683
Target Start/End: Complemental strand, 39002780 - 39002104
Alignment:
| Q |
8 |
gacatcatcaccattctcactttcacagtgatttagttaggaactgataactaaatttggcatcatgcagtaatgttaatttgttttagaattactagat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39002780 |
gacatcatcaccattctcactttcacagtgatttagctaggaactgataactaaagttggcatcatgcagcaatgttaatttgttttagaattactagat |
39002681 |
T |
|
| Q |
108 |
gcttttgatcctttgatttgggagtccttgatgagccctcttttacgcatgtaaagcaaattacgcaacatgtaggaatccaagaatacatcaggaattt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39002680 |
gcttttgatcctttgatttgggagtccttgatgagccctcttttacgcatgtaaagcaaattacgcaacatgtaggaatccaagaatacatcaggaattt |
39002581 |
T |
|
| Q |
208 |
tccttatgagaaatgactgcagattgtgaaagaggtaaggtacaaccaatttttcatagccaatccattttgtgcatgctttgctgtatttatctggtgt |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39002580 |
tccttatgagaaatgactgcagattgtgaaagaggtaaggtacaaccaatttttcatagccaatccattttgtgcatgctttgctgtatttatctggtgt |
39002481 |
T |
|
| Q |
308 |
tggaacaaaaagtgatgccctcatccttgtcatttttgttgacacaaataatggtacctgtatattcaaattcatttcaatttaagctcagaatacatct |
407 |
Q |
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| T |
39002480 |
tggaacaaaaagtgatgccctcatccttgtcatttttgttgacacaaataatggtacctgtatattcaaattcatttcaatttaagctcagaatacatct |
39002381 |
T |
|
| Q |
408 |
caagatataggtacaaaggtatctaaggctaagatttacaaactttaaaatcaaattcaaattaagtgcatatttagatacacaatggatttggcgaggt |
507 |
Q |
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| T |
39002380 |
caagatataggtacaaaggtatctaaggctaagatttacaaactttaaaatcaaattcaaattaagtgcatatttagatacactatggatttggcgaggt |
39002281 |
T |
|
| Q |
508 |
tacaaagtgtagtttttgtcaaaatcactgtaacatacggtggttttac-aaactcacatgaatccaaacatggactaaaaattacaataactaactact |
606 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39002280 |
tacagagtgtagtttttgtcaaaatcactgtaacatgcggtggttttacaaaactcacatgaatccaaacatggattaaaaattacaataactaactact |
39002181 |
T |
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| Q |
607 |
agaatattactcctaacttatgaagcacggaatctcctaggattagatgcgtcctggttttggacacgtgctagtgt |
683 |
Q |
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| T |
39002180 |
agaatattactcctaacttacgaagcacggaatctcctaggattagatgcgtcctggttttggacacgtgctagtgt |
39002104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 78 - 384
Target Start/End: Complemental strand, 38998049 - 38997740
Alignment:
| Q |
78 |
taatgttaatttgttttagaattactagatgcttttgatcctttgatttgggagtccttgatgagccctcttttacgcatgtaaagcaaattacgcaaca |
177 |
Q |
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||||||| |||||| | |||||||| |||||||| | ||||||||||||||||||| | |||||| ||| ||| |||| |||||| ||| ||| | || |
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| T |
38998049 |
taatgttgatttgtctcagaattacaagatgcttctaatcctttgatttgggagtcgtcgatgagtcctttttcacgccggtaaagaaaaaaacgtagca |
38997950 |
T |
|
| Q |
178 |
tgtaggaatccaagaatacatcaggaattttccttatgagaaatgactgcagattgtgaaagaggtaaggtacaaccaatttttcatagccaatccattt |
277 |
Q |
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| T |
38997949 |
tataggaatccatgagtacatcaggaattttccttatgagaaacgactgcagattgtgaaagaagtaaggcacaaccaatttttcatagccaatccattt |
38997850 |
T |
|
| Q |
278 |
tgtgcatgctttgctgtatttatctggtgttggaacaaaaagtgatgccctcat---ccttgtcatttttgttgacacaaataatggtacctgtatattc |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| | |||| | ||||||||||||||| ||||| | ||| |||||| |||| |
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| T |
38997849 |
tgtgcatgctttgctgtatttatctggtgttggaacaaaaagtgatgtcttcatatcacatgtcatttttgttgagacaaacattggagcctgtacattc |
38997750 |
T |
|
| Q |
375 |
aaattcattt |
384 |
Q |
| |
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||||| |||| |
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| T |
38997749 |
aaattgattt |
38997740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 100; Significance: 5e-49; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 13 - 152
Target Start/End: Original strand, 21839360 - 21839499
Alignment:
| Q |
13 |
catcaccattctcactttcacagtgatttagttaggaactgataactaaatttggcatcatgcagtaatgttaatttgttttagaattactagatgcttt |
112 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |||||||| |||||| |||||||||| |
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| T |
21839360 |
catcaccactctcactttcacagtgatttagttaggaactgaaaactaaatttggcatcatacatcaatgttgatttgtttcagaattgctagatgcttc |
21839459 |
T |
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| Q |
113 |
tgatcctttgatttgggagtccttgatgagccctctttta |
152 |
Q |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
21839460 |
tgatactttgatttgggagtccttgatgagccctctttta |
21839499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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