View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_10 (Length: 417)
Name: NF3883_low_10
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 6 - 319
Target Start/End: Complemental strand, 2244924 - 2244629
Alignment:
| Q |
6 |
aggagcagagacaagccaatagattaactcatttaacaaagacacagcaatatcgtcggtcaacatgctatatagatcaactcatatgtttcagataggg |
105 |
Q |
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| T |
2244924 |
aggagcagtgacaagccaatagattaactcatttaacaaagacacagcaatatcgtcggtcaacatactatatagatcaactcacatgtttcagataggg |
2244825 |
T |
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| Q |
106 |
gtggacaaatggtcggttccggtcggaatcggtcgaaaaaacaaaatccgagtagacccacagatgatatatagccacccaatttcgtccataagagcac |
205 |
Q |
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| T |
2244824 |
gtggacaaatggtcggttccg----------gtcgaaaaaacgaaatccgagtagacccacagatgatatatagccacccaatttcgtc----------c |
2244745 |
T |
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| Q |
206 |
atgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatactt--cacacacgttcgatctctgacttttccgtatgaaaaaatctgattta |
303 |
Q |
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| T |
2244744 |
atgggttgtgcgggtggcggtttgaacgggtggtaagcgactcaaatacttcacacacacgttcgatctctgacttttccgtatgaaaaaatctgattta |
2244645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 351 - 390
Target Start/End: Complemental strand, 2244628 - 2244589
Alignment:
| Q |
351 |
atcaatgctgaatatacctactaacaaacttatccaagat |
390 |
Q |
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| T |
2244628 |
atcaatgctgaatatacctactaacaaacttatccaagat |
2244589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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