View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_13 (Length: 339)
Name: NF3883_low_13
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 326
Target Start/End: Complemental strand, 41980444 - 41980129
Alignment:
| Q |
10 |
attatactgtgaaaaatttgagtagtaatgttttggggattaagcttgttactgtttctggtgctcctttgatttgtggttttgagaattatgcattggt |
109 |
Q |
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| T |
41980444 |
attatactgtgaaaaatttgagtagtaatgttttggggattaagcttgttactgtttctggtgctcctttgatttgtggttttgagaattatgcattggt |
41980345 |
T |
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| Q |
110 |
gcttaatgaaccttccactcaccctcttcaaggtttttcctcttacaagtattttctttatttctcatattaaaaggtgtgtctggtgtatgacacgttt |
209 |
Q |
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| T |
41980344 |
gcttaatgaaccttccactcaccctcttcaaggtttttcctcttacaagtattttctttatttctcatatt-aaaggtgtgtctggtgtatgacacgttt |
41980246 |
T |
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| Q |
210 |
ggatgtctgattgaaatgtacataacaccaacgaatgtggttatattcaatcactttgagttttttaaattattacaactgtttatgcatcagtggtggt |
309 |
Q |
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| T |
41980245 |
ggatgtctgattgacatgtacataacaccaacgaatgtggttatattcaatcactttgagttttttaaattattataactgtttatgcatcagtggtggt |
41980146 |
T |
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| Q |
310 |
aatgttagtgtcgtatc |
326 |
Q |
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| T |
41980145 |
aatgttagtgtcgtatc |
41980129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 248 - 296
Target Start/End: Complemental strand, 35819031 - 35818983
Alignment:
| Q |
248 |
ggttatattcaatcactttgagttttttaaattattacaactgtttatg |
296 |
Q |
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| T |
35819031 |
ggttatattcaatcatttttatttttttaaattattacaagtgtctatg |
35818983 |
T |
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