View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3883_low_16 (Length: 280)
Name: NF3883_low_16
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_16 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 33 - 280
Target Start/End: Original strand, 31570324 - 31570571
Alignment:
| Q |
33 |
gagggaaacatagccaaagttgtacattgattttgtagtccaatttcccacacttaaatctctcttatctaagttactatcttgcatctgtttcaccacc |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31570324 |
gagggaaacatagccaaagttgtacattgattttgtagtccaatttcccacacttaaatctctcttatctaagttactatcttgcatctgtttcaccacc |
31570423 |
T |
|
| Q |
133 |
ttttcgatcttcacaacttgataatggtcaaaactaataatgagctctcatatttttaaagagcacactattttattactgtaacattttcaagtggcac |
232 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31570424 |
ttttcgatcttcacaacttgataatggtcaaaactaataatgagctctcatatttttaaagagcacacttttttattactgtaacattttcaagtggcac |
31570523 |
T |
|
| Q |
233 |
gatgttattgtgaagtttgggttcattattgttccccactaatcccca |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31570524 |
aatgttattgtgaagtttgggttcattattgttccccactaatcccca |
31570571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University