View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3883_low_22 (Length: 236)
Name: NF3883_low_22
Description: NF3883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3883_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 86 - 220
Target Start/End: Complemental strand, 5750964 - 5750830
Alignment:
| Q |
86 |
gattcatgcaaaatgggtaattgcgtattcaaaggctttcatcatggagattttgaagaaacaatggtaagaattgtaacatcaaatggaggcatcatgg |
185 |
Q |
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| T |
5750964 |
gattcatgcaaaatgggtaattgcgtattcaaaggctttcatcatggagattttgaagaaacaatggtaagaattgtaacatcaaatggaggcatcatgg |
5750865 |
T |
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| Q |
186 |
aactttattctcccataacggttgaatgcataacc |
220 |
Q |
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| T |
5750864 |
aactttattctcccataacggttgaatgcataacc |
5750830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5751049 - 5751012
Alignment:
| Q |
1 |
caacccttcaccaccacctcaaagtaaatcttgcaaac |
38 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
5751049 |
caacccttcaccaccacctcaaagtaaatcttgcaaac |
5751012 |
T |
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